RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 NISCHQ9Y2I1 1504 aa8.31□□□□□ -1.08
CSMD3-203ENST00000343508 SUPT5HO00267 1087 aaKnown RBP7.75□□□□□ -1.17
CSMD3-203ENST00000343508 DCAF8L2P0C7V8 631 aa7.73□□□□□ -1.17
CSMD3-203ENST00000343508 PELP1Q8IZL8 1130 aaKnown RBP7.64□□□□□ -1.19
CSMD3-203ENST00000343508 SHROOM4Q9ULL8 1493 aa7.63□□□□□ -1.19
CSMD3-203ENST00000343508 MYT1Q01538 1121 aa7.56□□□□□ -1.2
CSMD3-203ENST00000343508 PCGF6Q9BYE7 350 aa7.54□□□□□ -1.2
CSMD3-203ENST00000343508 ZEB1P37275 1124 aaPredicted RBP7.54□□□□□ -1.2
CSMD3-203ENST00000343508 HRCP23327 699 aa7.44□□□□□ -1.22
CSMD3-203ENST00000343508 CENPBP07199 599 aaPredicted RBP7.43□□□□□ -1.22
CSMD3-203ENST00000343508 TRIM26Q12899 539 aaPredicted RBP7.35□□□□□ -1.23
CSMD3-203ENST00000343508 CCER1Q8TC90 406 aaPredicted RBP7.3□□□□□ -1.24
CSMD3-203ENST00000343508 EHMT2Q96KQ7 1210 aa7.27□□□□□ -1.25
CSMD3-203ENST00000343508 TRIM41Q8WV44 630 aa7.26□□□□□ -1.25
CSMD3-203ENST00000343508 APLP2Q06481 763 aa7.26□□□□□ -1.25
CSMD3-203ENST00000343508 FAM9AQ8IZU1 332 aaPredicted RBP7.22□□□□□ -1.25
CSMD3-203ENST00000343508 CHIC1Q5VXU3 224 aa7.19□□□□□ -1.26
CSMD3-203ENST00000343508 ERICH6Q7L0X2 663 aa7.15□□□□□ -1.26
CSMD3-203ENST00000343508 PPARGC1BQ86YN6 1023 aaKnown RBP7.14□□□□□ -1.27
CSMD3-203ENST00000343508 LOC105371045A0A1W2PR82 267 aa7.1□□□□□ -1.27
CSMD3-203ENST00000343508 YTHDC1Q96MU7 727 aaKnown RBP7.09□□□□□ -1.27
CSMD3-203ENST00000343508 TTBK1Q5TCY1 1321 aaPredicted RBP7.09□□□□□ -1.27
CSMD3-203ENST00000343508 DCAF1Q9Y4B6 1507 aa7.09□□□□□ -1.28
CSMD3-203ENST00000343508 DIEXFQ68CQ4 756 aaKnown RBP7.08□□□□□ -1.28
CSMD3-203ENST00000343508 NEFLP07196 543 aa7.07□□□□□ -1.28
CSMD3-203ENST00000343508 UBTFP17480 764 aaKnown RBP7.03□□□□□ -1.28
CSMD3-203ENST00000343508 CCDC180Q9P1Z9 1646 aa7.03□□□□□ -1.28
CSMD3-203ENST00000343508 GTF3C3Q9Y5Q9 886 aa7□□□□□ -1.29
CSMD3-203ENST00000343508 ZCCHC6Q5VYS8 1495 aaKnown RBP6.98□□□□□ -1.29
CSMD3-203ENST00000343508 ACIN1Q9UKV3 1341 aaKnown RBP6.97□□□□□ -1.29
CSMD3-203ENST00000343508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.97□□□□□ -1.29
CSMD3-203ENST00000343508 CLSPNQ9HAW4 1339 aa6.94□□□□□ -1.3
CSMD3-203ENST00000343508 ZNF316A6NFI3 1004 aaPredicted RBP6.9□□□□□ -1.31
CSMD3-203ENST00000343508 RANGAP1P46060 587 aaPredicted RBP6.89□□□□□ -1.31
CSMD3-203ENST00000343508 MYO15BQ96JP2 1530 aa6.89□□□□□ -1.31
CSMD3-203ENST00000343508 SCAF1Q9H7N4 1312 aaKnown RBP6.86□□□□□ -1.31
CSMD3-203ENST00000343508 HNRNPUL2Q1KMD3 747 aaKnown RBP6.85□□□□□ -1.31
CSMD3-203ENST00000343508 ATP1B4Q9UN42 357 aaPredicted RBP6.83□□□□□ -1.32
CSMD3-203ENST00000343508 NEUROD1Q13562 356 aa6.8□□□□□ -1.32
CSMD3-203ENST00000343508 DAXXQ9UER7 740 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-203ENST00000343508 RTL5Q5HYW3 569 aaPredicted RBP6.78□□□□□ -1.32
CSMD3-203ENST00000343508 CDK11AQ9UQ88 783 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-203ENST00000343508 SCRIBQ14160 1630 aa6.77□□□□□ -1.33
CSMD3-203ENST00000343508 MYT1LQ9UL68 1186 aa6.75□□□□□ -1.33
CSMD3-203ENST00000343508 ITGAEP38570 1179 aa6.75□□□□□ -1.33
CSMD3-203ENST00000343508 ANP32CO43423 234 aa6.74□□□□□ -1.33
CSMD3-203ENST00000343508 RB1CC1Q8TDY2 1594 aa6.71□□□□□ -1.34
CSMD3-203ENST00000343508 BCANQ96GW7 911 aa6.68□□□□□ -1.34
CSMD3-203ENST00000343508 CSRNP3Q8WYN3 585 aa6.67□□□□□ -1.34
CSMD3-203ENST00000343508 FKBP8Q14318 412 aa6.66□□□□□ -1.34
CSMD3-203ENST00000343508 FAM50AQ14320 339 aaKnown RBP6.65□□□□□ -1.34
CSMD3-203ENST00000343508 ANP32AP39687 249 aaKnown RBP6.65□□□□□ -1.35
CSMD3-203ENST00000343508 ABCC9O60706 1549 aa6.65□□□□□ -1.35
CSMD3-203ENST00000343508 EEA1Q15075 1411 aa6.64□□□□□ -1.35
CSMD3-203ENST00000343508 MIER1Q8N108 512 aa6.64□□□□□ -1.35
CSMD3-203ENST00000343508 ANP32EQ9BTT0 268 aa6.63□□□□□ -1.35
CSMD3-203ENST00000343508 RSF1Q96T23 1441 aaPredicted RBP6.62□□□□□ -1.35
CSMD3-203ENST00000343508 GOLGA3Q08378 1498 aa6.62□□□□□ -1.35
CSMD3-203ENST00000343508 CEP162Q5TB80 1403 aa6.61□□□□□ -1.35
CSMD3-203ENST00000343508 POLR3GLQ9BT43 218 aa6.6□□□□□ -1.35
CSMD3-203ENST00000343508 NACADO15069 1562 aa6.57□□□□□ -1.36
CSMD3-203ENST00000343508 TNIKQ9UKE5 1360 aa6.57□□□□□ -1.36
CSMD3-203ENST00000343508 TONSLQ96HA7 1378 aa6.56□□□□□ -1.36
CSMD3-203ENST00000343508 CLIP1P30622 1438 aa6.55□□□□□ -1.36
CSMD3-203ENST00000343508 TRIM52Q96A61 297 aa6.55□□□□□ -1.36
CSMD3-203ENST00000343508 HNRNPUQ00839 825 aaKnown RBP eCLIP6.55□□□□□ -1.36
CSMD3-203ENST00000343508 CEP164Q9UPV0 1460 aa6.55□□□□□ -1.36
CSMD3-203ENST00000343508 SUPT16HQ9Y5B9 1047 aaKnown RBP6.55□□□□□ -1.36
CSMD3-203ENST00000343508 DDX10Q13206 875 aaKnown RBP6.54□□□□□ -1.36
CSMD3-203ENST00000343508 BAZ1AQ9NRL2 1556 aaPredicted RBP6.54□□□□□ -1.36
CSMD3-203ENST00000343508 GLIPR1L2Q4G1C9 344 aa6.53□□□□□ -1.36
CSMD3-203ENST00000343508 CNGB1Q14028 1251 aaPredicted RBP6.53□□□□□ -1.36
CSMD3-203ENST00000343508 ZBTB47Q9UFB7 747 aaPredicted RBP6.53□□□□□ -1.36
CSMD3-203ENST00000343508 NBR1Q14596 966 aa6.48□□□□□ -1.37
CSMD3-203ENST00000343508 BCL11AQ9H165 835 aa6.48□□□□□ -1.37
CSMD3-203ENST00000343508 CCDC136Q96JN2 1154 aa6.47□□□□□ -1.37
CSMD3-203ENST00000343508 WIZO95785 1651 aa6.47□□□□□ -1.37
CSMD3-203ENST00000343508 WRNQ14191 1432 aaPredicted RBP eCLIP6.47□□□□□ -1.37
CSMD3-203ENST00000343508 FAM9BQ8IZU0 186 aa6.46□□□□□ -1.38
CSMD3-203ENST00000343508 EIF5BO60841 1220 aaKnown RBP6.46□□□□□ -1.38
CSMD3-203ENST00000343508 NPM2Q86SE8 214 aaKnown RBP6.45□□□□□ -1.38
CSMD3-203ENST00000343508 TIMELESSQ9UNS1 1208 aa6.44□□□□□ -1.38
CSMD3-203ENST00000343508 UPF2Q9HAU5 1272 aaKnown RBP6.44□□□□□ -1.38
CSMD3-203ENST00000343508 RBM19Q9Y4C8 960 aaKnown RBP6.44□□□□□ -1.38
CSMD3-203ENST00000343508 TMC1Q8TDI8 760 aa6.43□□□□□ -1.38
CSMD3-203ENST00000343508 DDRGK1Q96HY6 314 aa6.43□□□□□ -1.38
CSMD3-203ENST00000343508 VPS8Q8N3P4 1428 aa6.43□□□□□ -1.38
CSMD3-203ENST00000343508 EIF4G2P78344 907 aaKnown RBP eCLIP6.43□□□□□ -1.38
CSMD3-203ENST00000343508 PABPN1Q86U42 306 aaKnown RBP eCLIP6.43□□□□□ -1.38
CSMD3-203ENST00000343508 ABCC8Q09428 1581 aa6.43□□□□□ -1.38
CSMD3-203ENST00000343508 ERICH6BQ5W0A0 696 aa6.43□□□□□ -1.38
CSMD3-203ENST00000343508 CCER2I3L3R5 266 aa6.42□□□□□ -1.38
CSMD3-203ENST00000343508 ANP32BQ92688 251 aaKnown RBP6.42□□□□□ -1.38
CSMD3-203ENST00000343508 ZNF326Q5BKZ1 582 aaKnown RBP6.42□□□□□ -1.38
CSMD3-203ENST00000343508 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.41□□□□□ -1.38
CSMD3-203ENST00000343508 MRS2Q9HD23 443 aa6.41□□□□□ -1.38
CSMD3-203ENST00000343508 PPP4R2Q9NY27 417 aa6.41□□□□□ -1.38
CSMD3-203ENST00000343508 MROH2BQ7Z745 1585 aa6.41□□□□□ -1.38
CSMD3-203ENST00000343508 CCNB3Q8WWL7 1395 aa6.41□□□□□ -1.38
CSMD3-203ENST00000343508 NOP58Q9Y2X3 529 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms