Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 AC073314.1-201ENST00000568729 2216 ntBASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA9Q9Y5G4 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 AL137013.1-201ENST00000432946 1228 ntBASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCDHGA9Q9Y5G4 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 TERF1P1-201ENST00000311003 1181 ntBASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 AC010947.1-201ENST00000623454 693 ntBASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDHGA9Q9Y5G4 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 CYP2D8P-201ENST00000433633 1490 ntBASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 SLC25A3P1-201ENST00000443844 931 ntBASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 AC026271.3-201ENST00000571884 352 ntBASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 AL031985.4-201ENST00000642138 673 ntBASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PCDHGA9Q9Y5G4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 AC121338.2-201ENST00000622535 1744 ntBASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 AC073508.3-201ENST00000619697 1419 ntBASIC18.27■□□□□ 0.52
PCDHGA9Q9Y5G4 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms