Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 AC009237.14-201ENST00000609975 1594 ntBASIC18.57■□□□□ 0.56
SCN3AQ9NY46 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SCN3AQ9NY46 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 AL355075.4-201ENST00000554988 638 ntBASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 AC004264.1-201ENST00000608354 794 ntBASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SCN3AQ9NY46 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.55■□□□□ 0.56
SCN3AQ9NY46 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SCN3AQ9NY46 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 C1QL1P1-201ENST00000568105 661 ntBASIC18.54■□□□□ 0.56
SCN3AQ9NY46 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 Z82202.1-201ENST00000623446 1880 ntBASIC18.54■□□□□ 0.56
SCN3AQ9NY46 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 RARRES2P10-201ENST00000564312 460 ntBASIC18.54■□□□□ 0.56
SCN3AQ9NY46 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.54■□□□□ 0.56
SCN3AQ9NY46 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms