Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRIM39Q9HCM9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 AC008550.1-201ENST00000511500 884 ntBASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TRIM39Q9HCM9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 RARRES2P10-201ENST00000564312 460 ntBASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 AC112907.3-201ENST00000577781 2400 ntBASIC19.41■□□□□ 0.7
TRIM39Q9HCM9 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 KRT18P16-201ENST00000510337 1294 ntBASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 AL135905.2-201ENST00000584934 1404 ntBASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 TMEM179-206ENST00000616017 1645 ntBASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM39Q9HCM9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM39Q9HCM9 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM39Q9HCM9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
TRIM39Q9HCM9 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms