Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 AC100791.3-201ENST00000617619 330 ntBASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.04■□□□□ 0.64
CCDC28BQ9BUN5 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 MCRIP2P1-201ENST00000394346 511 ntBASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 AC016405.3-201ENST00000607710 860 ntBASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 AC010536.3-201ENST00000620306 533 ntBASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 AC120498.9-201ENST00000339021 3867 ntBASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC28BQ9BUN5 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 AP000997.3-201ENST00000623333 2250 ntBASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 AC007322.4-201ENST00000509611 723 ntBASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC28BQ9BUN5 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC28BQ9BUN5 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC28BQ9BUN5 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 MFSD11-216ENST00000590393 1141 ntBASIC19■□□□□ 0.63
CCDC28BQ9BUN5 AC005837.3-201ENST00000612163 286 ntBASIC19■□□□□ 0.63
CCDC28BQ9BUN5 AC105020.6-201ENST00000621523 1217 ntBASIC19■□□□□ 0.63
CCDC28BQ9BUN5 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC28BQ9BUN5 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms