Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 AC105036.2-201ENST00000569468 176 ntBASIC19.62■□□□□ 0.73
VPS39Q96JC1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS39Q96JC1 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VPS39Q96JC1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 CDCA4P2-201ENST00000441182 718 ntBASIC19.61■□□□□ 0.73
VPS39Q96JC1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 AL032819.2-201ENST00000624543 2162 ntBASIC19.61■□□□□ 0.73
VPS39Q96JC1 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS39Q96JC1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS39Q96JC1 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.6■□□□□ 0.73
VPS39Q96JC1 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 AC026185.1-201ENST00000445748 174 ntBASIC19.6■□□□□ 0.73
VPS39Q96JC1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 AC018553.1-201ENST00000616682 1458 ntBASIC19.6■□□□□ 0.73
VPS39Q96JC1 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.6■□□□□ 0.73
VPS39Q96JC1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS39Q96JC1 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 MIR663A-201ENST00000385250 93 ntBASIC19.59■□□□□ 0.73
VPS39Q96JC1 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.59■□□□□ 0.73
VPS39Q96JC1 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 AL020996.1-203ENST00000536896 2307 ntBASIC19.59■□□□□ 0.73
VPS39Q96JC1 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS39Q96JC1 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS39Q96JC1 RNF165-205ENST00000588679 2904 ntBASIC19.58■□□□□ 0.73
VPS39Q96JC1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 AC116351.2-201ENST00000606540 1585 ntBASIC19.58■□□□□ 0.73
VPS39Q96JC1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
VPS39Q96JC1 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms