Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
SUMO3P55854 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SUMO3P55854 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SUMO3P55854 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
SUMO3P55854 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SUMO3P55854 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.77■□□□□ 0.43
SUMO3P55854 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.77■□□□□ 0.43
SUMO3P55854 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
SUMO3P55854 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SUMO3P55854 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SUMO3P55854 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC17.76■□□□□ 0.43
SUMO3P55854 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SUMO3P55854 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.76■□□□□ 0.43
SUMO3P55854 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 KRT16P5-201ENST00000455284 522 ntBASIC17.76■□□□□ 0.43
SUMO3P55854 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SUMO3P55854 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC17.76■□□□□ 0.43
SUMO3P55854 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.76■□□□□ 0.43
SUMO3P55854 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SUMO3P55854 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.75■□□□□ 0.43
SUMO3P55854 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
SUMO3P55854 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
SUMO3P55854 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.75■□□□□ 0.43
SUMO3P55854 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SUMO3P55854 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.75■□□□□ 0.43
SUMO3P55854 C1QL1P1-201ENST00000568105 661 ntBASIC17.75■□□□□ 0.43
SUMO3P55854 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC17.75■□□□□ 0.43
SUMO3P55854 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
SUMO3P55854 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SUMO3P55854 AFG3L1P-217ENST00000557444 2447 ntBASIC17.74■□□□□ 0.43
SUMO3P55854 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 ABHD17AP1-201ENST00000358206 933 ntBASIC17.74■□□□□ 0.43
SUMO3P55854 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SUMO3P55854 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
SUMO3P55854 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.74■□□□□ 0.43
SUMO3P55854 C1QBPP2-201ENST00000528754 825 ntBASIC17.74■□□□□ 0.43
SUMO3P55854 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.74■□□□□ 0.43
SUMO3P55854 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC17.74■□□□□ 0.43
SUMO3P55854 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.74■□□□□ 0.43
SUMO3P55854 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
SUMO3P55854 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SUMO3P55854 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.73■□□□□ 0.43
SUMO3P55854 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.73■□□□□ 0.43
SUMO3P55854 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.73■□□□□ 0.43
SUMO3P55854 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
SUMO3P55854 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC17.73■□□□□ 0.43
SUMO3P55854 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SUMO3P55854 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.73■□□□□ 0.43
SUMO3P55854 RPPH1-201ENST00000516869 333 ntBASIC17.73■□□□□ 0.43
SUMO3P55854 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.73■□□□□ 0.43
SUMO3P55854 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SUMO3P55854 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms