Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.18■□□□□ 0.82
NEK3P51956 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.18■□□□□ 0.82
NEK3P51956 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.18■□□□□ 0.82
NEK3P51956 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.18■□□□□ 0.82
NEK3P51956 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
NEK3P51956 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.18■□□□□ 0.82
NEK3P51956 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.18■□□□□ 0.82
NEK3P51956 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NEK3P51956 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.17■□□□□ 0.82
NEK3P51956 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NEK3P51956 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 UBE2SP1-201ENST00000450587 669 ntBASIC20.17■□□□□ 0.82
NEK3P51956 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.17■□□□□ 0.82
NEK3P51956 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
NEK3P51956 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.17■□□□□ 0.82
NEK3P51956 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
NEK3P51956 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NEK3P51956 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.17■□□□□ 0.82
NEK3P51956 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
NEK3P51956 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.17■□□□□ 0.82
NEK3P51956 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.16■□□□□ 0.82
NEK3P51956 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.16■□□□□ 0.82
NEK3P51956 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.16■□□□□ 0.82
NEK3P51956 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
NEK3P51956 HLA-G-202ENST00000376815 851 ntBASIC20.16■□□□□ 0.82
NEK3P51956 HLA-G-203ENST00000376818 1127 ntBASIC20.16■□□□□ 0.82
NEK3P51956 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.16■□□□□ 0.82
NEK3P51956 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.16■□□□□ 0.82
NEK3P51956 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 MTDHP1-201ENST00000605323 784 ntBASIC20.16■□□□□ 0.82
NEK3P51956 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.16■□□□□ 0.82
NEK3P51956 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NEK3P51956 TMEM179-206ENST00000616017 1645 ntBASIC20.16■□□□□ 0.82
NEK3P51956 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.16■□□□□ 0.82
NEK3P51956 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.15■□□□□ 0.82
NEK3P51956 AL691432.2-201ENST00000607222 2038 ntBASIC20.15■□□□□ 0.82
NEK3P51956 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NEK3P51956 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.15■□□□□ 0.82
NEK3P51956 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.15■□□□□ 0.82
NEK3P51956 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.15■□□□□ 0.82
NEK3P51956 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.15■□□□□ 0.82
NEK3P51956 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.15■□□□□ 0.82
NEK3P51956 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
NEK3P51956 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
NEK3P51956 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NEK3P51956 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
NEK3P51956 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
NEK3P51956 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
NEK3P51956 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.14■□□□□ 0.82
NEK3P51956 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.14■□□□□ 0.81
NEK3P51956 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NEK3P51956 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.14■□□□□ 0.81
NEK3P51956 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.14■□□□□ 0.81
NEK3P51956 PTBP1P-201ENST00000554374 1601 ntBASIC20.14■□□□□ 0.81
NEK3P51956 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms