Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 PTMA-205ENST00000410064 814 ntTSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC14.41□□□□□ -0.1
CKS2P33552 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC14.41□□□□□ -0.1
CKS2P33552 LTB4R2-202ENST00000528054 3092 ntBASIC14.41□□□□□ -0.1
CKS2P33552 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
CKS2P33552 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
CKS2P33552 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CKS2P33552 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC14.4□□□□□ -0.1
CKS2P33552 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC14.4□□□□□ -0.1
CKS2P33552 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC14.4□□□□□ -0.1
CKS2P33552 AC233992.3-201ENST00000607491 485 ntBASIC14.4□□□□□ -0.1
CKS2P33552 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CKS2P33552 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
CKS2P33552 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CKS2P33552 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CKS2P33552 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 AC104581.1-202ENST00000635932 2618 ntBASIC14.39□□□□□ -0.11
CKS2P33552 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
CKS2P33552 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CKS2P33552 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 AL390961.4-201ENST00000623958 2535 ntBASIC14.39□□□□□ -0.11
CKS2P33552 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 CROCCP3-202ENST00000420820 1947 ntBASIC14.39□□□□□ -0.11
CKS2P33552 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC14.39□□□□□ -0.11
CKS2P33552 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CKS2P33552 FZD10-202ENST00000539839 3282 ntBASIC14.39□□□□□ -0.11
CKS2P33552 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
CKS2P33552 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CKS2P33552 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CKS2P33552 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 SRR-208ENST00000576848 588 ntTSL 4 BASIC14.38□□□□□ -0.11
CKS2P33552 FAM21FP-204ENST00000608637 956 ntBASIC14.38□□□□□ -0.11
CKS2P33552 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CKS2P33552 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC14.38□□□□□ -0.11
CKS2P33552 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms