Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DPB1P04440 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DPB1P04440 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DPB1P04440 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HLA-DPB1P04440 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DPB1P04440 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HLA-DPB1P04440 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
HLA-DPB1P04440 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.58■□□□□ 0.41
HLA-DPB1P04440 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HLA-DPB1P04440 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 AL591742.1-201ENST00000604433 565 ntBASIC17.57■□□□□ 0.4
HLA-DPB1P04440 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.57■□□□□ 0.4
HLA-DPB1P04440 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 LETM1P2-201ENST00000597330 2178 ntBASIC17.56■□□□□ 0.4
HLA-DPB1P04440 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 AC007322.3-201ENST00000426526 701 ntBASIC17.56■□□□□ 0.4
HLA-DPB1P04440 AC007322.1-201ENST00000426983 750 ntBASIC17.56■□□□□ 0.4
HLA-DPB1P04440 CDV3P1-201ENST00000471403 739 ntBASIC17.56■□□□□ 0.4
HLA-DPB1P04440 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 PLLP-204ENST00000569059 665 ntTSL 3 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 VPS53-216ENST00000574029 585 ntTSL 4 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 AC073111.5-205ENST00000641717 521 ntBASIC17.56■□□□□ 0.4
HLA-DPB1P04440 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
HLA-DPB1P04440 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 AC231657.2-201ENST00000624556 255 ntBASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 AC068338.2-201ENST00000563278 1430 ntBASIC17.55■□□□□ 0.4
HLA-DPB1P04440 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
HLA-DPB1P04440 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC17.54■□□□□ 0.4
HLA-DPB1P04440 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DPB1P04440 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DPB1P04440 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HLA-DPB1P04440 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms