Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.14■□□□□ 0.65
SIX3O95343 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.14■□□□□ 0.65
SIX3O95343 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
SIX3O95343 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SIX3O95343 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SIX3O95343 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
SIX3O95343 AC124283.5-201ENST00000624661 1809 ntBASIC19.14■□□□□ 0.65
SIX3O95343 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.14■□□□□ 0.65
SIX3O95343 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.13■□□□□ 0.65
SIX3O95343 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.13■□□□□ 0.65
SIX3O95343 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SIX3O95343 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.13■□□□□ 0.65
SIX3O95343 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.13■□□□□ 0.65
SIX3O95343 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 AC005829.2-201ENST00000571422 1056 ntBASIC19.13■□□□□ 0.65
SIX3O95343 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 TFP1-202ENST00000475455 1573 ntBASIC19.13■□□□□ 0.65
SIX3O95343 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
SIX3O95343 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
SIX3O95343 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SIX3O95343 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
SIX3O95343 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX3O95343 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.12■□□□□ 0.65
SIX3O95343 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
SIX3O95343 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.12■□□□□ 0.65
SIX3O95343 AC091874.3-201ENST00000512672 1195 ntBASIC19.12■□□□□ 0.65
SIX3O95343 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SIX3O95343 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19.12■□□□□ 0.65
SIX3O95343 AC092118.2-201ENST00000613495 667 ntBASIC19.12■□□□□ 0.65
SIX3O95343 AC006557.6-201ENST00000623071 864 ntBASIC19.12■□□□□ 0.65
SIX3O95343 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
SIX3O95343 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SIX3O95343 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX3O95343 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 AL390719.1-204ENST00000412397 1219 ntBASIC19.11■□□□□ 0.65
SIX3O95343 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX3O95343 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX3O95343 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.11■□□□□ 0.65
SIX3O95343 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX3O95343 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.11■□□□□ 0.65
SIX3O95343 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.11■□□□□ 0.65
SIX3O95343 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SIX3O95343 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
SIX3O95343 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX3O95343 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX3O95343 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SIX3O95343 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX3O95343 AC073210.2-201ENST00000430369 194 ntBASIC19.1■□□□□ 0.65
SIX3O95343 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.1■□□□□ 0.65
SIX3O95343 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms