Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.6■□□□□ 0.57
PROM1O43490 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
PROM1O43490 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
PROM1O43490 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.59■□□□□ 0.57
PROM1O43490 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 FAM201B-201ENST00000458407 597 ntBASIC18.59■□□□□ 0.57
PROM1O43490 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.59■□□□□ 0.57
PROM1O43490 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.59■□□□□ 0.57
PROM1O43490 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PROM1O43490 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
PROM1O43490 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PROM1O43490 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.58■□□□□ 0.57
PROM1O43490 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.58■□□□□ 0.57
PROM1O43490 TREX1-205ENST00000625293 1783 ntBASIC18.58■□□□□ 0.57
PROM1O43490 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.58■□□□□ 0.57
PROM1O43490 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.58■□□□□ 0.57
PROM1O43490 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PROM1O43490 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
PROM1O43490 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
PROM1O43490 ESRRAP1-201ENST00000400596 1257 ntBASIC18.58■□□□□ 0.56
PROM1O43490 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.58■□□□□ 0.56
PROM1O43490 KRT17P3-201ENST00000420566 1262 ntBASIC18.58■□□□□ 0.56
PROM1O43490 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.58■□□□□ 0.56
PROM1O43490 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.58■□□□□ 0.56
PROM1O43490 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.58■□□□□ 0.56
PROM1O43490 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
PROM1O43490 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PROM1O43490 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
PROM1O43490 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PROM1O43490 AL158211.5-201ENST00000623583 2518 ntBASIC18.58■□□□□ 0.56
PROM1O43490 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
PROM1O43490 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.58■□□□□ 0.56
PROM1O43490 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.57■□□□□ 0.56
PROM1O43490 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.57■□□□□ 0.56
PROM1O43490 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.57■□□□□ 0.56
PROM1O43490 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.57■□□□□ 0.56
PROM1O43490 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.57■□□□□ 0.56
PROM1O43490 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.57■□□□□ 0.56
PROM1O43490 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
PROM1O43490 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
PROM1O43490 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
PROM1O43490 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
PROM1O43490 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
PROM1O43490 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
PROM1O43490 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
PROM1O43490 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
PROM1O43490 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
PROM1O43490 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.56■□□□□ 0.56
PROM1O43490 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.56■□□□□ 0.56
PROM1O43490 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms