Protein–RNA interactions for Protein: A0A0D9SF12

CCDC163, Coiled-coil domain-containing 163, humanhuman

Predictions only

Length 145 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC163A0A0D9SF12 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC163A0A0D9SF12 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 HCG4P8-203ENST00000443049 980 ntBASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 AC093458.2-201ENST00000623150 629 ntBASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC163A0A0D9SF12 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 AL359075.1-203ENST00000462729 1002 ntBASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 AL160286.2-201ENST00000567150 934 ntBASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC163A0A0D9SF12 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 FP700111.2-201ENST00000619190 1892 ntBASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC163A0A0D9SF12 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 PTK2-216ENST00000519881 863 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 AL691432.3-201ENST00000621860 400 ntBASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 AL023973.1-201ENST00000624619 620 ntBASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CCDC163A0A0D9SF12 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms