Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 AL136967.2-201ENST00000623968 743 ntBASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
USH1CQ9Y6N9 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.52■□□□□ 0.71
USH1CQ9Y6N9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USH1CQ9Y6N9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USH1CQ9Y6N9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
USH1CQ9Y6N9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 AC243732.1-201ENST00000612648 864 ntBASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
USH1CQ9Y6N9 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 BCL2-203ENST00000589955 5011 ntBASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 AP001160.3-201ENST00000601484 763 ntBASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 AC104187.1-201ENST00000607510 612 ntBASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 RBM17P2-201ENST00000616397 1405 ntBASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USH1CQ9Y6N9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 AL390961.4-201ENST00000623958 2535 ntBASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 AC105265.2-201ENST00000467189 838 ntBASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 CCDC92B-201ENST00000575506 885 ntBASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USH1CQ9Y6N9 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms