Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 GUSBP6-202ENST00000438529 1198 ntBASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 BX323043.1-201ENST00000641006 1765 ntBASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HIF3AQ9Y2N7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 Z82202.1-201ENST00000623446 1880 ntBASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 NCF1B-203ENST00000435988 1254 ntBASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 HES2-206ENST00000489730 730 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 AC091874.3-201ENST00000512672 1195 ntBASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HIF3AQ9Y2N7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SLC29A4P1-201ENST00000398760 971 ntBASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 TSPY6P-201ENST00000448518 926 ntBASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 TFP1-202ENST00000475455 1573 ntBASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 AC018445.3-201ENST00000624177 1945 ntBASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HIF3AQ9Y2N7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms