Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.31■■□□□ 1
CDT1Q9H211 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
CDT1Q9H211 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.3■■□□□ 1
CDT1Q9H211 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CDT1Q9H211 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.3■■□□□ 1
CDT1Q9H211 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.3■■□□□ 1
CDT1Q9H211 AC026471.5-201ENST00000615068 467 ntBASIC21.3■■□□□ 1
CDT1Q9H211 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.3■■□□□ 1
CDT1Q9H211 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDT1Q9H211 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CDT1Q9H211 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.29■■□□□ 1
CDT1Q9H211 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.29■■□□□ 1
CDT1Q9H211 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.29■■□□□ 1
CDT1Q9H211 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
CDT1Q9H211 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.29■■□□□ 1
CDT1Q9H211 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 KRT8P8-201ENST00000434750 1448 ntBASIC21.29■■□□□ 1
CDT1Q9H211 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.29■■□□□ 1
CDT1Q9H211 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
CDT1Q9H211 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.28■■□□□ 1
CDT1Q9H211 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CDT1Q9H211 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.28■■□□□ 1
CDT1Q9H211 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.28■■□□□ 1
CDT1Q9H211 AL445675.2-201ENST00000620291 557 ntBASIC21.28■■□□□ 1
CDT1Q9H211 CR392000.1-201ENST00000624770 1228 ntBASIC21.28■■□□□ 1
CDT1Q9H211 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CDT1Q9H211 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 KRT17P2-201ENST00000300992 1314 ntBASIC21.28■■□□□ 1
CDT1Q9H211 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.28■■□□□ 1
CDT1Q9H211 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDT1Q9H211 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.27■■□□□ 1
CDT1Q9H211 TSPY15P-201ENST00000457163 923 ntBASIC21.27■■□□□ 1
CDT1Q9H211 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.27■■□□□ 1
CDT1Q9H211 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.27■■□□□ 1
CDT1Q9H211 HLA-A-209ENST00000638375 975 ntBASIC21.27■■□□□ 1
CDT1Q9H211 KRT16P1-201ENST00000399124 1418 ntBASIC21.27■■□□□ 1
CDT1Q9H211 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CDT1Q9H211 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
CDT1Q9H211 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.27■□□□□ 0.99
CDT1Q9H211 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CDT1Q9H211 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC21.27■□□□□ 0.99
CDT1Q9H211 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.26■□□□□ 0.99
CDT1Q9H211 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CDT1Q9H211 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 AP003071.4-201ENST00000562276 1284 ntBASIC21.26■□□□□ 0.99
CDT1Q9H211 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.26■□□□□ 0.99
CDT1Q9H211 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CDT1Q9H211 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms