Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 AL353708.3-201ENST00000610272 989 ntBASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 CABP2-204ENST00000636477 941 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
NKX2-3Q8TAU0 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 CALM3-202ENST00000391918 702 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 KRASP1-201ENST00000407852 552 ntBASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
NKX2-3Q8TAU0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
NKX2-3Q8TAU0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
NKX2-3Q8TAU0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
NKX2-3Q8TAU0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 AC026471.5-201ENST00000615068 467 ntBASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.27■■□□□ 1.32
NKX2-3Q8TAU0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
NKX2-3Q8TAU0 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC23.27■■□□□ 1.31
NKX2-3Q8TAU0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms