Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CYP2D8P-201ENST00000433633 1490 ntBASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AL356652.1-201ENST00000615962 565 ntBASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 Z98882.1-201ENST00000622160 2253 ntBASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC104076.2-201ENST00000448912 469 ntBASIC6.04□□□□□ -1.44
SYNE1Q8NF91 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 RBM42-202ENST00000586618 771 ntTSL 3 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SYNE1Q8NF91 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AL137013.1-201ENST00000432946 1228 ntBASIC6.03□□□□□ -1.44
SYNE1Q8NF91 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 FDX2-207ENST00000494368 584 ntTSL 4 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CFL2-205ENST00000555765 632 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC6.03□□□□□ -1.44
SYNE1Q8NF91 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms