Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 AL138781.2-201ENST00000617896 1843 ntBASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NUDCD3Q8IVD9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
NUDCD3Q8IVD9 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NUDCD3Q8IVD9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.45■□□□□ 0.7
NUDCD3Q8IVD9 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 AC016405.3-201ENST00000607710 860 ntBASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NUDCD3Q8IVD9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms