Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH12P55289 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CDH12P55289 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH12P55289 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.27■□□□□ 0.51
CDH12P55289 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
CDH12P55289 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CDH12P55289 AC093503.3-201ENST00000624917 2352 ntBASIC18.26■□□□□ 0.51
CDH12P55289 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
CDH12P55289 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH12P55289 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH12P55289 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH12P55289 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH12P55289 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CDH12P55289 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH12P55289 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH12P55289 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH12P55289 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CDH12P55289 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.25■□□□□ 0.51
CDH12P55289 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.25■□□□□ 0.51
CDH12P55289 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CDH12P55289 AL031963.3-201ENST00000606441 850 ntBASIC18.25■□□□□ 0.51
CDH12P55289 OR10C1-204ENST00000622521 1039 ntBASIC18.25■□□□□ 0.51
CDH12P55289 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CDH12P55289 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CDH12P55289 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.25■□□□□ 0.51
CDH12P55289 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CDH12P55289 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CDH12P55289 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CDH12P55289 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.24■□□□□ 0.51
CDH12P55289 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CDH12P55289 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
CDH12P55289 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.24■□□□□ 0.51
CDH12P55289 AP001271.2-201ENST00000624018 1556 ntBASIC18.24■□□□□ 0.51
CDH12P55289 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CDH12P55289 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CDH12P55289 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CDH12P55289 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms