Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.2■□□□□ 0.66
CDH3P22223 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.2■□□□□ 0.66
CDH3P22223 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH3P22223 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH3P22223 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH3P22223 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH3P22223 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CDH3P22223 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CDH3P22223 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.19■□□□□ 0.66
CDH3P22223 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.19■□□□□ 0.66
CDH3P22223 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 KRASP1-201ENST00000407852 552 ntBASIC19.19■□□□□ 0.66
CDH3P22223 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.19■□□□□ 0.66
CDH3P22223 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 AL121906.2-201ENST00000621597 723 ntBASIC19.19■□□□□ 0.66
CDH3P22223 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.19■□□□□ 0.66
CDH3P22223 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CDH3P22223 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDH3P22223 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CDH3P22223 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
CDH3P22223 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.18■□□□□ 0.66
CDH3P22223 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.18■□□□□ 0.66
CDH3P22223 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CDH3P22223 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.18■□□□□ 0.66
CDH3P22223 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.18■□□□□ 0.66
CDH3P22223 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.18■□□□□ 0.66
CDH3P22223 AL121829.2-201ENST00000620908 328 ntBASIC19.18■□□□□ 0.66
CDH3P22223 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDH3P22223 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDH3P22223 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
CDH3P22223 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.18■□□□□ 0.66
CDH3P22223 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.17■□□□□ 0.66
CDH3P22223 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.17■□□□□ 0.66
CDH3P22223 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.17■□□□□ 0.66
CDH3P22223 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.17■□□□□ 0.66
CDH3P22223 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.17■□□□□ 0.66
CDH3P22223 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CDH3P22223 AC124016.1-201ENST00000609552 612 ntBASIC19.17■□□□□ 0.66
CDH3P22223 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
CDH3P22223 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDH3P22223 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CDH3P22223 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.16■□□□□ 0.66
CDH3P22223 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CDH3P22223 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.16■□□□□ 0.66
CDH3P22223 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 SERF2-207ENST00000409614 582 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH3P22223 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH3P22223 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH3P22223 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
CDH3P22223 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.16■□□□□ 0.66
CDH3P22223 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 SMG8-203ENST00000578922 2178 ntBASIC19.16■□□□□ 0.66
CDH3P22223 KRT16P6-202ENST00000425692 1426 ntBASIC19.16■□□□□ 0.66
CDH3P22223 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDH3P22223 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.16■□□□□ 0.66
CDH3P22223 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDH3P22223 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDH3P22223 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms