Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL9A1P20849 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.27■□□□□ 0.83
COL9A1P20849 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.26■□□□□ 0.83
COL9A1P20849 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
COL9A1P20849 PMS2P2-201ENST00000425039 1128 ntBASIC20.26■□□□□ 0.83
COL9A1P20849 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.26■□□□□ 0.83
COL9A1P20849 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.26■□□□□ 0.83
COL9A1P20849 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL9A1P20849 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
COL9A1P20849 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.25■□□□□ 0.83
COL9A1P20849 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.25■□□□□ 0.83
COL9A1P20849 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.25■□□□□ 0.83
COL9A1P20849 AC106795.1-205ENST00000512851 1056 ntBASIC20.25■□□□□ 0.83
COL9A1P20849 AL662844.1-201ENST00000546340 181 ntBASIC20.25■□□□□ 0.83
COL9A1P20849 DGCR10-201ENST00000609839 495 ntBASIC20.25■□□□□ 0.83
COL9A1P20849 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.25■□□□□ 0.83
COL9A1P20849 AF228730.7-201ENST00000641842 219 ntBASIC20.25■□□□□ 0.83
COL9A1P20849 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL9A1P20849 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL9A1P20849 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
COL9A1P20849 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.24■□□□□ 0.83
COL9A1P20849 PRSS44-201ENST00000515154 1146 ntBASIC20.24■□□□□ 0.83
COL9A1P20849 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.24■□□□□ 0.83
COL9A1P20849 AC140113.3-201ENST00000605663 199 ntBASIC20.24■□□□□ 0.83
COL9A1P20849 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.24■□□□□ 0.83
COL9A1P20849 NME4-212ENST00000621774 904 ntTSL 3 BASIC20.24■□□□□ 0.83
COL9A1P20849 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.24■□□□□ 0.83
COL9A1P20849 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.24■□□□□ 0.83
COL9A1P20849 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.24■□□□□ 0.83
COL9A1P20849 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.24■□□□□ 0.83
COL9A1P20849 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL9A1P20849 PTBP1P-201ENST00000554374 1601 ntBASIC20.24■□□□□ 0.83
COL9A1P20849 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.23■□□□□ 0.83
COL9A1P20849 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.23■□□□□ 0.83
COL9A1P20849 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
COL9A1P20849 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.23■□□□□ 0.83
COL9A1P20849 AL590627.1-203ENST00000421194 1026 ntBASIC20.23■□□□□ 0.83
COL9A1P20849 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 HLA-J-203ENST00000494367 1087 ntBASIC20.23■□□□□ 0.83
COL9A1P20849 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.23■□□□□ 0.83
COL9A1P20849 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.23■□□□□ 0.83
COL9A1P20849 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
COL9A1P20849 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.23■□□□□ 0.83
COL9A1P20849 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
COL9A1P20849 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.23■□□□□ 0.83
COL9A1P20849 AC116562.4-202ENST00000641738 218 ntBASIC20.23■□□□□ 0.83
COL9A1P20849 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL9A1P20849 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.22■□□□□ 0.83
COL9A1P20849 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
COL9A1P20849 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL9A1P20849 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL9A1P20849 KRT18P38-201ENST00000449496 1282 ntBASIC20.22■□□□□ 0.83
COL9A1P20849 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.22■□□□□ 0.83
COL9A1P20849 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.22■□□□□ 0.83
COL9A1P20849 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.22■□□□□ 0.83
COL9A1P20849 ZNF444P1-201ENST00000559497 298 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms