Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TPM1P09493 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TPM1P09493 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.6■■□□□ 1.05
TPM1P09493 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TPM1P09493 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.6■■□□□ 1.05
TPM1P09493 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TPM1P09493 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 KRT8P20-201ENST00000423953 1409 ntBASIC21.6■■□□□ 1.05
TPM1P09493 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.6■■□□□ 1.05
TPM1P09493 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.6■■□□□ 1.05
TPM1P09493 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
TPM1P09493 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
TPM1P09493 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.59■■□□□ 1.05
TPM1P09493 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.59■■□□□ 1.05
TPM1P09493 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.59■■□□□ 1.05
TPM1P09493 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.59■■□□□ 1.05
TPM1P09493 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
TPM1P09493 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.59■■□□□ 1.05
TPM1P09493 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
TPM1P09493 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
TPM1P09493 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TPM1P09493 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TPM1P09493 PTBP1P-201ENST00000554374 1601 ntBASIC21.58■■□□□ 1.05
TPM1P09493 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.58■■□□□ 1.05
TPM1P09493 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TPM1P09493 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
TPM1P09493 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TPM1P09493 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.58■■□□□ 1.05
TPM1P09493 TERF1P5-201ENST00000477545 1207 ntBASIC21.58■■□□□ 1.05
TPM1P09493 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.58■■□□□ 1.05
TPM1P09493 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
TPM1P09493 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TPM1P09493 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TPM1P09493 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.58■■□□□ 1.04
TPM1P09493 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
TPM1P09493 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
TPM1P09493 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TPM1P09493 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.58■■□□□ 1.04
TPM1P09493 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
TPM1P09493 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 AL032819.2-201ENST00000624543 2162 ntBASIC21.57■■□□□ 1.04
TPM1P09493 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC21.57■■□□□ 1.04
TPM1P09493 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
TPM1P09493 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TPM1P09493 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TPM1P09493 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.57■■□□□ 1.04
TPM1P09493 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.57■■□□□ 1.04
TPM1P09493 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM1P09493 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
TPM1P09493 AC005082.1-201ENST00000413042 2259 ntBASIC21.56■■□□□ 1.04
TPM1P09493 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.56■■□□□ 1.04
TPM1P09493 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TPM1P09493 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.56■■□□□ 1.04
TPM1P09493 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.56■■□□□ 1.04
TPM1P09493 AL162412.1-201ENST00000567129 965 ntBASIC21.56■■□□□ 1.04
TPM1P09493 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.56■■□□□ 1.04
TPM1P09493 AC093503.3-201ENST00000624917 2352 ntBASIC21.56■■□□□ 1.04
TPM1P09493 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TPM1P09493 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms