Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
APOBP04114 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.32□□□□□ -0.44
APOBP04114 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
APOBP04114 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC12.32□□□□□ -0.44
APOBP04114 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC12.32□□□□□ -0.44
APOBP04114 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 KRT8P17-201ENST00000453110 1448 ntBASIC12.32□□□□□ -0.44
APOBP04114 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
APOBP04114 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
APOBP04114 AC242852.2-201ENST00000615738 1807 ntBASIC12.32□□□□□ -0.44
APOBP04114 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
APOBP04114 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
APOBP04114 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC12.31□□□□□ -0.44
APOBP04114 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
APOBP04114 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC12.31□□□□□ -0.44
APOBP04114 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC12.31□□□□□ -0.44
APOBP04114 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC12.31□□□□□ -0.44
APOBP04114 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC12.31□□□□□ -0.44
APOBP04114 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC12.31□□□□□ -0.44
APOBP04114 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC12.31□□□□□ -0.44
APOBP04114 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
APOBP04114 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
APOBP04114 AL645929.1-201ENST00000420084 975 ntBASIC12.3□□□□□ -0.44
APOBP04114 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC12.3□□□□□ -0.44
APOBP04114 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC12.3□□□□□ -0.44
APOBP04114 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
APOBP04114 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC12.3□□□□□ -0.44
APOBP04114 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
APOBP04114 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC12.3□□□□□ -0.44
APOBP04114 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 ANKRD20A18P-201ENST00000359341 492 ntBASIC12.3□□□□□ -0.44
APOBP04114 NEK4P2-201ENST00000580004 1012 ntBASIC12.3□□□□□ -0.44
APOBP04114 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC12.3□□□□□ -0.44
APOBP04114 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC12.3□□□□□ -0.44
APOBP04114 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 AP002414.4-201ENST00000589764 1148 ntBASIC12.3□□□□□ -0.44
APOBP04114 AL031008.1-201ENST00000619963 541 ntBASIC12.3□□□□□ -0.44
APOBP04114 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
APOBP04114 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC12.3□□□□□ -0.44
APOBP04114 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC12.29□□□□□ -0.44
APOBP04114 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC12.29□□□□□ -0.44
APOBP04114 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.29□□□□□ -0.44
APOBP04114 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC12.29□□□□□ -0.44
APOBP04114 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC12.29□□□□□ -0.44
APOBP04114 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC12.29□□□□□ -0.44
APOBP04114 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.29□□□□□ -0.44
APOBP04114 GUSBP5-202ENST00000510805 1989 ntBASIC12.29□□□□□ -0.44
APOBP04114 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
APOBP04114 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC12.29□□□□□ -0.44
APOBP04114 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC12.29□□□□□ -0.44
APOBP04114 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
APOBP04114 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC12.29□□□□□ -0.44
APOBP04114 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
APOBP04114 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC12.28□□□□□ -0.44
APOBP04114 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC12.28□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms