Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLPTM1O96005 AC123595.1-201ENST00000440769 1046 ntBASIC18.48■□□□□ 0.55
CLPTM1O96005 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.48■□□□□ 0.55
CLPTM1O96005 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CLPTM1O96005 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.48■□□□□ 0.55
CLPTM1O96005 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLPTM1O96005 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CLPTM1O96005 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.47■□□□□ 0.55
CLPTM1O96005 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.47■□□□□ 0.55
CLPTM1O96005 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CLPTM1O96005 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.47■□□□□ 0.55
CLPTM1O96005 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.47■□□□□ 0.55
CLPTM1O96005 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CLPTM1O96005 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.47■□□□□ 0.55
CLPTM1O96005 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CLPTM1O96005 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.47■□□□□ 0.55
CLPTM1O96005 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CLPTM1O96005 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.47■□□□□ 0.55
CLPTM1O96005 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.47■□□□□ 0.55
CLPTM1O96005 NOC2LP2-201ENST00000407594 1944 ntBASIC18.47■□□□□ 0.55
CLPTM1O96005 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CLPTM1O96005 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.46■□□□□ 0.55
CLPTM1O96005 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.46■□□□□ 0.55
CLPTM1O96005 CCDC92B-201ENST00000575506 885 ntBASIC18.46■□□□□ 0.55
CLPTM1O96005 TPRG1LP1-201ENST00000598702 760 ntBASIC18.46■□□□□ 0.55
CLPTM1O96005 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.46■□□□□ 0.55
CLPTM1O96005 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CLPTM1O96005 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLPTM1O96005 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
CLPTM1O96005 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.54
CLPTM1O96005 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLPTM1O96005 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.46■□□□□ 0.54
CLPTM1O96005 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.54
CLPTM1O96005 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.45■□□□□ 0.54
CLPTM1O96005 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 LINC02228-203ENST00000641970 1355 ntBASIC18.45■□□□□ 0.54
CLPTM1O96005 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 MIR5787-201ENST00000611784 55 ntBASIC18.45■□□□□ 0.54
CLPTM1O96005 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.45■□□□□ 0.54
CLPTM1O96005 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.45■□□□□ 0.54
CLPTM1O96005 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.45■□□□□ 0.54
CLPTM1O96005 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.45■□□□□ 0.54
CLPTM1O96005 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CLPTM1O96005 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CLPTM1O96005 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.45■□□□□ 0.54
CLPTM1O96005 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.45■□□□□ 0.54
CLPTM1O96005 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CLPTM1O96005 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.44■□□□□ 0.54
CLPTM1O96005 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.44■□□□□ 0.54
CLPTM1O96005 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.44■□□□□ 0.54
CLPTM1O96005 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.44■□□□□ 0.54
CLPTM1O96005 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CLPTM1O96005 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms