Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC27.79■■■□□ 2.04
NPHP4O75161 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 HBZP1-201ENST00000354915 429 ntBASIC27.79■■■□□ 2.04
NPHP4O75161 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 PHB2-202ENST00000440277 996 ntTSL 5 BASIC27.79■■■□□ 2.04
NPHP4O75161 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
NPHP4O75161 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
NPHP4O75161 AL031008.1-201ENST00000619963 541 ntBASIC27.79■■■□□ 2.04
NPHP4O75161 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.79■■■□□ 2.04
NPHP4O75161 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
NPHP4O75161 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC27.78■■■□□ 2.04
NPHP4O75161 PPIH-202ENST00000372549 327 ntTSL 3 BASIC27.78■■■□□ 2.04
NPHP4O75161 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC27.78■■■□□ 2.04
NPHP4O75161 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC27.78■■■□□ 2.04
NPHP4O75161 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC27.78■■■□□ 2.04
NPHP4O75161 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP4O75161 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC27.78■■■□□ 2.04
NPHP4O75161 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC27.78■■■□□ 2.04
NPHP4O75161 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC27.78■■■□□ 2.04
NPHP4O75161 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC27.78■■■□□ 2.04
NPHP4O75161 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC27.78■■■□□ 2.04
NPHP4O75161 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC27.78■■■□□ 2.04
NPHP4O75161 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
NPHP4O75161 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP4O75161 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC27.77■■■□□ 2.04
NPHP4O75161 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC27.77■■■□□ 2.04
NPHP4O75161 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC27.77■■■□□ 2.04
NPHP4O75161 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP4O75161 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP4O75161 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC27.77■■■□□ 2.04
NPHP4O75161 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
NPHP4O75161 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC27.77■■■□□ 2.04
NPHP4O75161 AL121603.2-201ENST00000557373 2117 ntBASIC27.77■■■□□ 2.04
NPHP4O75161 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC27.77■■■□□ 2.04
NPHP4O75161 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.04
NPHP4O75161 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC27.76■■■□□ 2.04
NPHP4O75161 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
NPHP4O75161 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC27.76■■■□□ 2.03
NPHP4O75161 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC27.76■■■□□ 2.03
NPHP4O75161 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
NPHP4O75161 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC27.76■■■□□ 2.03
NPHP4O75161 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC27.76■■■□□ 2.03
NPHP4O75161 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC27.75■■■□□ 2.03
NPHP4O75161 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC27.75■■■□□ 2.03
NPHP4O75161 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 KRT16P6-202ENST00000425692 1426 ntBASIC27.75■■■□□ 2.03
NPHP4O75161 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
NPHP4O75161 TSSC2-201ENST00000450217 709 ntBASIC27.75■■■□□ 2.03
NPHP4O75161 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC27.75■■■□□ 2.03
NPHP4O75161 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 AC104692.2-201ENST00000603054 253 ntBASIC27.75■■■□□ 2.03
NPHP4O75161 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC27.75■■■□□ 2.03
NPHP4O75161 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC27.75■■■□□ 2.03
NPHP4O75161 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
NPHP4O75161 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 PHGDH-210ENST00000641115 1638 ntBASIC27.74■■■□□ 2.03
NPHP4O75161 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC27.74■■■□□ 2.03
NPHP4O75161 TBCB-205ENST00000585746 875 ntTSL 3 BASIC27.74■■■□□ 2.03
NPHP4O75161 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC27.74■■■□□ 2.03
NPHP4O75161 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
NPHP4O75161 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC27.73■■■□□ 2.03
NPHP4O75161 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC27.73■■■□□ 2.03
NPHP4O75161 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC27.73■■■□□ 2.03
NPHP4O75161 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC27.73■■■□□ 2.03
NPHP4O75161 AP002383.4-201ENST00000442518 975 ntBASIC27.73■■■□□ 2.03
NPHP4O75161 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC27.73■■■□□ 2.03
NPHP4O75161 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC27.73■■■□□ 2.03
NPHP4O75161 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 GXYLT1P4-201ENST00000613576 1192 ntBASIC27.73■■■□□ 2.03
NPHP4O75161 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC27.73■■■□□ 2.03
NPHP4O75161 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC27.73■■■□□ 2.03
NPHP4O75161 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
NPHP4O75161 AC121338.2-201ENST00000622535 1744 ntBASIC27.72■■■□□ 2.03
NPHP4O75161 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
NPHP4O75161 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms