Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AP003097.1-201ENST00000530657 1135 ntBASIC17.24■□□□□ 0.35
LMX1BO60663 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.24■□□□□ 0.35
LMX1BO60663 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.24■□□□□ 0.35
LMX1BO60663 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1BO60663 AC105020.6-201ENST00000621523 1217 ntBASIC17.24■□□□□ 0.35
LMX1BO60663 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LMX1BO60663 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
LMX1BO60663 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LMX1BO60663 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.24■□□□□ 0.35
LMX1BO60663 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LMX1BO60663 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.23■□□□□ 0.35
LMX1BO60663 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
LMX1BO60663 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.23■□□□□ 0.35
LMX1BO60663 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.23■□□□□ 0.35
LMX1BO60663 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
LMX1BO60663 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.23■□□□□ 0.35
LMX1BO60663 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.23■□□□□ 0.35
LMX1BO60663 AC073648.6-201ENST00000641589 218 ntBASIC17.23■□□□□ 0.35
LMX1BO60663 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
LMX1BO60663 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.23■□□□□ 0.35
LMX1BO60663 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.23■□□□□ 0.35
LMX1BO60663 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 AC009237.14-201ENST00000609975 1594 ntBASIC17.23■□□□□ 0.35
LMX1BO60663 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LMX1BO60663 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.23■□□□□ 0.35
LMX1BO60663 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 KRT18P68-201ENST00000392293 1000 ntBASIC17.22■□□□□ 0.35
LMX1BO60663 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC17.22■□□□□ 0.35
LMX1BO60663 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
LMX1BO60663 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
LMX1BO60663 AL031963.3-201ENST00000606441 850 ntBASIC17.22■□□□□ 0.35
LMX1BO60663 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.22■□□□□ 0.35
LMX1BO60663 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LMX1BO60663 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LMX1BO60663 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.21■□□□□ 0.35
LMX1BO60663 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
LMX1BO60663 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1BO60663 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.21■□□□□ 0.35
LMX1BO60663 UBE2SP1-201ENST00000450587 669 ntBASIC17.21■□□□□ 0.35
LMX1BO60663 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.21■□□□□ 0.35
LMX1BO60663 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.21■□□□□ 0.35
LMX1BO60663 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.21■□□□□ 0.35
LMX1BO60663 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.21■□□□□ 0.35
LMX1BO60663 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LMX1BO60663 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LMX1BO60663 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC17.21■□□□□ 0.34
LMX1BO60663 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
LMX1BO60663 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
LMX1BO60663 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.2■□□□□ 0.34
LMX1BO60663 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.2■□□□□ 0.34
LMX1BO60663 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1BO60663 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
LMX1BO60663 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1BO60663 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1BO60663 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LMX1BO60663 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms