Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
MSH6P52701 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC7.66□□□□□ -1.18
MSH6P52701 AC016027.5-201ENST00000427227 210 ntBASIC7.66□□□□□ -1.18
MSH6P52701 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
MSH6P52701 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC7.66□□□□□ -1.18
MSH6P52701 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC7.66□□□□□ -1.18
MSH6P52701 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.66□□□□□ -1.18
MSH6P52701 AC020937.1-201ENST00000519677 1013 ntBASIC7.66□□□□□ -1.18
MSH6P52701 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.66□□□□□ -1.18
MSH6P52701 AL161616.1-201ENST00000611867 286 ntBASIC7.66□□□□□ -1.18
MSH6P52701 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC7.66□□□□□ -1.18
MSH6P52701 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC7.66□□□□□ -1.18
MSH6P52701 CPS1-IT1-201ENST00000628368 2306 ntBASIC7.66□□□□□ -1.18
MSH6P52701 TRPC1-205ENST00000612385 3620 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
MSH6P52701 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.66□□□□□ -1.18
MSH6P52701 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
MSH6P52701 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSH6P52701 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSH6P52701 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
MSH6P52701 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC7.65□□□□□ -1.18
MSH6P52701 SNURFL-201ENST00000309296 343 ntBASIC7.65□□□□□ -1.18
MSH6P52701 RPS16P5-201ENST00000406501 404 ntBASIC7.65□□□□□ -1.18
MSH6P52701 RNA5SP251-201ENST00000410614 137 ntBASIC7.65□□□□□ -1.18
MSH6P52701 RPL7P16-201ENST00000479738 738 ntBASIC7.65□□□□□ -1.18
MSH6P52701 HMGB1P44-201ENST00000508597 572 ntBASIC7.65□□□□□ -1.18
MSH6P52701 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC7.65□□□□□ -1.18
MSH6P52701 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.18
MSH6P52701 ATP5J2P6-201ENST00000565203 266 ntBASIC7.65□□□□□ -1.18
MSH6P52701 SS18L2P2-201ENST00000583960 235 ntBASIC7.65□□□□□ -1.18
MSH6P52701 AC093799.2-201ENST00000610062 578 ntBASIC7.65□□□□□ -1.18
MSH6P52701 EIF3FP1-201ENST00000613970 806 ntBASIC7.65□□□□□ -1.18
MSH6P52701 AC099494.2-201ENST00000623371 978 ntBASIC7.65□□□□□ -1.18
MSH6P52701 AC112694.2-201ENST00000623697 768 ntBASIC7.65□□□□□ -1.18
MSH6P52701 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.65□□□□□ -1.18
MSH6P52701 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.65□□□□□ -1.18
MSH6P52701 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
MSH6P52701 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
MSH6P52701 AC110716.2-201ENST00000563865 3945 ntBASIC7.65□□□□□ -1.19
MSH6P52701 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC7.65□□□□□ -1.19
MSH6P52701 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC7.65□□□□□ -1.19
MSH6P52701 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
MSH6P52701 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.65□□□□□ -1.19
MSH6P52701 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 SLF1-201ENST00000265140 5905 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 RN7SKP149-201ENST00000363008 344 ntBASIC7.64□□□□□ -1.19
MSH6P52701 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 AL133482.1-201ENST00000415988 498 ntBASIC7.64□□□□□ -1.19
MSH6P52701 RPS17P17-201ENST00000419392 409 ntBASIC7.64□□□□□ -1.19
MSH6P52701 AC008072.1-201ENST00000434254 824 ntBASIC7.64□□□□□ -1.19
MSH6P52701 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.64□□□□□ -1.19
MSH6P52701 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC7.64□□□□□ -1.19
MSH6P52701 NDUFA12P1-201ENST00000455914 406 ntBASIC7.64□□□□□ -1.19
MSH6P52701 AC009127.1-201ENST00000467090 155 ntBASIC7.64□□□□□ -1.19
MSH6P52701 SCARNA16.4-201ENST00000516956 187 ntBASIC7.64□□□□□ -1.19
MSH6P52701 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 AGGF1P7-201ENST00000562369 913 ntBASIC7.64□□□□□ -1.19
MSH6P52701 RPL27-207ENST00000590864 569 ntTSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC7.64□□□□□ -1.19
MSH6P52701 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 AC016717.3-201ENST00000624730 554 ntBASIC7.64□□□□□ -1.19
MSH6P52701 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.64□□□□□ -1.19
MSH6P52701 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC7.64□□□□□ -1.19
MSH6P52701 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
MSH6P52701 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSH6P52701 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC7.63□□□□□ -1.19
MSH6P52701 NPM1P40-201ENST00000412758 733 ntBASIC7.63□□□□□ -1.19
MSH6P52701 AC019050.1-201ENST00000418508 492 ntBASIC7.63□□□□□ -1.19
MSH6P52701 GSTM5P1-201ENST00000434751 660 ntBASIC7.63□□□□□ -1.19
MSH6P52701 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH6P52701 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH6P52701 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH6P52701 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
MSH6P52701 OR5AN2P-201ENST00000534535 896 ntBASIC7.63□□□□□ -1.19
MSH6P52701 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC7.63□□□□□ -1.19
MSH6P52701 AC007346.2-201ENST00000564816 892 ntBASIC7.63□□□□□ -1.19
MSH6P52701 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC7.63□□□□□ -1.19
MSH6P52701 MIR7703-201ENST00000620784 77 ntBASIC7.63□□□□□ -1.19
MSH6P52701 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC7.63□□□□□ -1.19
MSH6P52701 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC7.63□□□□□ -1.19
MSH6P52701 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC7.63□□□□□ -1.19
MSH6P52701 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
MSH6P52701 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
MSH6P52701 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 3673.2 ms