RNA–Protein interactions for RNA: ENST00000508597.1

HMGB1P44-201, Transcript of high mobility group box 1 pseudogene 44, humanhuman

BASIC

Gene HMGB1P44, Length 572 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P44-201ENST00000508597 AEBP2Q6ZN18 517 aaPredicted RBP21.86■■□□□ 1.09
HMGB1P44-201ENST00000508597 CHIC1Q5VXU3 224 aa21.15■□□□□ 0.98
HMGB1P44-201ENST00000508597 PHF23Q9BUL5 403 aaPredicted RBP18.73■□□□□ 0.59
HMGB1P44-201ENST00000508597 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
HMGB1P44-201ENST00000508597 FOXD1Q16676 465 aa17.17■□□□□ 0.34
HMGB1P44-201ENST00000508597 PLPPR3Q6T4P5 718 aa17.07■□□□□ 0.32
HMGB1P44-201ENST00000508597 PPP6R1Q9UPN7 881 aa16.58■□□□□ 0.24
HMGB1P44-201ENST00000508597 ADRA2BP18089 450 aa16.52■□□□□ 0.24
HMGB1P44-201ENST00000508597 PIAS4Q8N2W9 510 aaPredicted RBP16.09■□□□□ 0.17
HMGB1P44-201ENST00000508597 MSH5O43196 834 aa15.67■□□□□ 0.1
HMGB1P44-201ENST00000508597 POTEDQ86YR6 584 aa15.63■□□□□ 0.09
HMGB1P44-201ENST00000508597 PPP4R3CPQ6ZMV5 832 aa15.12■□□□□ 0.01
HMGB1P44-201ENST00000508597 MAPK8IP2Q13387 824 aaPredicted RBP15.05■□□□□ -0
HMGB1P44-201ENST00000508597 SCAF1Q9H7N4 1312 aaKnown RBP14.86□□□□□ -0.03
HMGB1P44-201ENST00000508597 KCNA4P22459 653 aa14.79□□□□□ -0.04
HMGB1P44-201ENST00000508597 DMRT2Q9Y5R5 561 aa14.68□□□□□ -0.06
HMGB1P44-201ENST00000508597 CNKSR2Q8WXI2 1034 aa14.64□□□□□ -0.07
HMGB1P44-201ENST00000508597 NCBP3Q53F19 620 aaKnown RBP14.56□□□□□ -0.08
HMGB1P44-201ENST00000508597 NPM3O75607 178 aaKnown RBP14.52□□□□□ -0.09
HMGB1P44-201ENST00000508597 RNF216Q9NWF9 866 aaPredicted RBP14.36□□□□□ -0.11
HMGB1P44-201ENST00000508597 HOXD11P31277 338 aaPredicted RBP14.35□□□□□ -0.11
HMGB1P44-201ENST00000508597 DCAF8L1A6NGE4 600 aa14.05□□□□□ -0.16
HMGB1P44-201ENST00000508597 DNAJC5BQ9UF47 199 aa13.99□□□□□ -0.17
HMGB1P44-201ENST00000508597 SLC4A1APQ9BWU0 796 aaKnown RBP13.97□□□□□ -0.17
HMGB1P44-201ENST00000508597 SLC4A2P04920 1241 aa13.78□□□□□ -0.2
HMGB1P44-201ENST00000508597 ZBTB22O15209 634 aa13.67□□□□□ -0.22
HMGB1P44-201ENST00000508597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.65□□□□□ -0.22
HMGB1P44-201ENST00000508597 EHMT2Q96KQ7 1210 aa13.59□□□□□ -0.23
HMGB1P44-201ENST00000508597 RNF39Q9H2S5 420 aa13.53□□□□□ -0.24
HMGB1P44-201ENST00000508597 U3KPZ7 1027 aaPredicted RBP13.51□□□□□ -0.25
HMGB1P44-201ENST00000508597 CSRNP3Q8WYN3 585 aa13.5□□□□□ -0.25
HMGB1P44-201ENST00000508597 FOXD4L1Q9NU39 408 aa13.49□□□□□ -0.25
HMGB1P44-201ENST00000508597 CACNB1Q02641 598 aaPredicted RBP13.36□□□□□ -0.27
HMGB1P44-201ENST00000508597 MYCNP04198 464 aaPredicted RBP13.31□□□□□ -0.28
HMGB1P44-201ENST00000508597 C1QBPQ07021 282 aaKnown RBP13.27□□□□□ -0.29
HMGB1P44-201ENST00000508597 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
HMGB1P44-201ENST00000508597 ATF5Q9Y2D1 282 aaPredicted RBP13.18□□□□□ -0.3
HMGB1P44-201ENST00000508597 SAMD1Q6SPF0 538 aaPredicted RBP13.1□□□□□ -0.31
HMGB1P44-201ENST00000508597 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.09□□□□□ -0.31
HMGB1P44-201ENST00000508597 HNRNPUL2Q1KMD3 747 aaKnown RBP13.09□□□□□ -0.31
HMGB1P44-201ENST00000508597 CAPN15O75808 1086 aa13.03□□□□□ -0.32
HMGB1P44-201ENST00000508597 TRHP20396 242 aaPredicted RBP13□□□□□ -0.33
HMGB1P44-201ENST00000508597 ATXN8OSP0DMR3 200 aa12.97□□□□□ -0.33
HMGB1P44-201ENST00000508597 APLP2Q06481 763 aa12.91□□□□□ -0.34
HMGB1P44-201ENST00000508597 NISCHQ9Y2I1 1504 aa12.88□□□□□ -0.35
HMGB1P44-201ENST00000508597 DSG3P32926 999 aa12.88□□□□□ -0.35
HMGB1P44-201ENST00000508597 ZNF219Q9P2Y4 722 aaPredicted RBP12.87□□□□□ -0.35
HMGB1P44-201ENST00000508597 ABCB7O75027 752 aa12.86□□□□□ -0.35
HMGB1P44-201ENST00000508597 POLA2Q14181 598 aa12.78□□□□□ -0.36
HMGB1P44-201ENST00000508597 MKRN4PQ13434 485 aaPredicted RBP12.56□□□□□ -0.4
HMGB1P44-201ENST00000508597 ZBTB12Q9Y330 459 aaPredicted RBP12.37□□□□□ -0.43
HMGB1P44-201ENST00000508597 FBLN2P98095 1184 aa12.36□□□□□ -0.43
HMGB1P44-201ENST00000508597 OSCARQ8IYS5 282 aa12.35□□□□□ -0.43
HMGB1P44-201ENST00000508597 POTEHQ6S545 545 aa12.15□□□□□ -0.46
HMGB1P44-201ENST00000508597 FKBP8Q14318 412 aa12.14□□□□□ -0.47
HMGB1P44-201ENST00000508597 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
HMGB1P44-201ENST00000508597 SPDYE2BA6NHP3 402 aa12.12□□□□□ -0.47
HMGB1P44-201ENST00000508597 SPDYE6P0CI01 402 aa12.12□□□□□ -0.47
HMGB1P44-201ENST00000508597 SPDYE2Q495Y8 402 aa12.12□□□□□ -0.47
HMGB1P44-201ENST00000508597 ZNF692Q9BU19 519 aaPredicted RBP12.12□□□□□ -0.47
HMGB1P44-201ENST00000508597 RBM42Q9BTD8 480 aaKnown RBP12.09□□□□□ -0.47
HMGB1P44-201ENST00000508597 SSUH2Q9Y2M2 353 aa12.09□□□□□ -0.47
HMGB1P44-201ENST00000508597 AKT1S1Q96B36 256 aa12.02□□□□□ -0.49
HMGB1P44-201ENST00000508597 PABPN1Q86U42 306 aaKnown RBP eCLIP11.99□□□□□ -0.49
HMGB1P44-201ENST00000508597 REM2Q8IYK8 340 aaPredicted RBP11.98□□□□□ -0.49
HMGB1P44-201ENST00000508597 PROM2Q8N271 834 aa11.95□□□□□ -0.5
HMGB1P44-201ENST00000508597 PITPNM1O00562 1244 aa11.85□□□□□ -0.51
HMGB1P44-201ENST00000508597 CLEC11AQ9Y240 323 aa11.8□□□□□ -0.52
HMGB1P44-201ENST00000508597 SPDYE1Q8NFV5 336 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P44-201ENST00000508597 CHRDL2Q6WN34 429 aa11.73□□□□□ -0.53
HMGB1P44-201ENST00000508597 PRR29P0C7W0 189 aa11.64□□□□□ -0.55
HMGB1P44-201ENST00000508597 FXR2P51116 673 aaKnown RBP eCLIP11.63□□□□□ -0.55
HMGB1P44-201ENST00000508597 STAG3Q9UJ98 1225 aa11.63□□□□□ -0.55
HMGB1P44-201ENST00000508597 PIP4P2Q8N4L2 257 aa11.62□□□□□ -0.55
HMGB1P44-201ENST00000508597 CHADLQ6NUI6 762 aa11.6□□□□□ -0.55
HMGB1P44-201ENST00000508597 CREBZFQ9NS37 354 aa11.58□□□□□ -0.56
HMGB1P44-201ENST00000508597 FBXO3Q9UK99 471 aa11.56□□□□□ -0.56
HMGB1P44-201ENST00000508597 PRKAR2AP13861 404 aaKnown RBP11.53□□□□□ -0.56
HMGB1P44-201ENST00000508597 VASPP50552 380 aaPredicted RBP11.52□□□□□ -0.57
HMGB1P44-201ENST00000508597 MIER1Q8N108 512 aa11.5□□□□□ -0.57
HMGB1P44-201ENST00000508597 MNX1P50219 401 aaPredicted RBP11.48□□□□□ -0.57
HMGB1P44-201ENST00000508597 IFNLR1Q8IU57 520 aaPredicted RBP11.45□□□□□ -0.58
HMGB1P44-201ENST00000508597 PLCD3Q8N3E9 789 aa11.44□□□□□ -0.58
HMGB1P44-201ENST00000508597 CCDC180Q9P1Z9 1646 aa11.42□□□□□ -0.58
HMGB1P44-201ENST00000508597 FARP1Q9Y4F1 1045 aaPredicted RBP11.4□□□□□ -0.58
HMGB1P44-201ENST00000508597 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
HMGB1P44-201ENST00000508597 EVX2Q03828 476 aa11.3□□□□□ -0.6
HMGB1P44-201ENST00000508597 NUBP1P53384 320 aa11.28□□□□□ -0.6
HMGB1P44-201ENST00000508597 PLEKHG5O94827 1062 aa11.27□□□□□ -0.61
HMGB1P44-201ENST00000508597 RASEFQ8IZ41 740 aa11.26□□□□□ -0.61
HMGB1P44-201ENST00000508597 SP7Q8TDD2 431 aaPredicted RBP11.24□□□□□ -0.61
HMGB1P44-201ENST00000508597 C19orf67A6NJJ6 358 aa11.23□□□□□ -0.61
HMGB1P44-201ENST00000508597 HAX1O00165 279 aa11.22□□□□□ -0.61
HMGB1P44-201ENST00000508597 NPM1P06748 294 aaKnown RBP eCLIP11.22□□□□□ -0.61
HMGB1P44-201ENST00000508597 SPOCK2Q92563 424 aa11.2□□□□□ -0.62
HMGB1P44-201ENST00000508597 ZBTB47Q9UFB7 747 aaPredicted RBP11.19□□□□□ -0.62
HMGB1P44-201ENST00000508597 CD44P16070 742 aaKnown RBP11.18□□□□□ -0.62
HMGB1P44-201ENST00000508597 TSPYL2Q9H2G4 693 aaPredicted RBP11.18□□□□□ -0.62
HMGB1P44-201ENST00000508597 ZRANB1Q9UGI0 708 aa11.12□□□□□ -0.63
HMGB1P44-201ENST00000508597 DCAF8Q5TAQ9 597 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms