Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PLAGL1-202ENST00000360537 4430 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 PPIA-204ENST00000468812 2238 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 TNFAIP8-204ENST00000503646 2502 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 NTRK3-201ENST00000317501 3826 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 Y_RNA.72-201ENST00000362894 103 ntBASIC7.19□□□□□ -1.26
MSX1P28360 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 Y_RNA.419-201ENST00000384041 102 ntBASIC7.19□□□□□ -1.26
MSX1P28360 GPX2-201ENST00000389614 990 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
MSX1P28360 SLC2A11-205ENST00000403208 564 ntTSL 4 BASIC7.19□□□□□ -1.26
MSX1P28360 RSU1P3-201ENST00000412878 835 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC013404.1-201ENST00000413068 249 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 RPS7P8-201ENST00000418311 581 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC016716.2-201ENST00000418621 486 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 RBMY2GP-201ENST00000418671 1034 ntBASIC7.19□□□□□ -1.26
MSX1P28360 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 RBMY2NP-201ENST00000434454 1028 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AL606752.1-201ENST00000435442 666 ntBASIC7.19□□□□□ -1.26
MSX1P28360 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 CYCSP11-201ENST00000436426 315 ntBASIC7.19□□□□□ -1.26
MSX1P28360 RPS26P30-201ENST00000443431 335 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC239798.1-201ENST00000449024 1176 ntBASIC7.19□□□□□ -1.26
MSX1P28360 OR52I1-201ENST00000450052 1050 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 RPL7P17-201ENST00000470927 724 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC109454.1-201ENST00000471205 498 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC074386.1-201ENST00000476560 767 ntBASIC7.19□□□□□ -1.26
MSX1P28360 FAM172BP-201ENST00000487497 1089 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 IGBP1P4-201ENST00000503202 879 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC7.19□□□□□ -1.26
MSX1P28360 AC026412.2-201ENST00000512270 1075 ntBASIC7.19□□□□□ -1.26
MSX1P28360 Y_RNA.693-201ENST00000516641 110 ntBASIC7.19□□□□□ -1.26
MSX1P28360 RBMS2P1-201ENST00000525031 1226 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC239860.2-201ENST00000525886 270 ntBASIC7.19□□□□□ -1.26
MSX1P28360 OR6M2P-201ENST00000529831 871 ntBASIC7.19□□□□□ -1.26
MSX1P28360 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 LRP1-AS-201ENST00000554476 325 ntTSL 3 BASIC7.19□□□□□ -1.26
MSX1P28360 AL355076.3-201ENST00000555838 587 ntBASIC7.19□□□□□ -1.26
MSX1P28360 PTCSC3-201ENST00000556013 571 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC7.19□□□□□ -1.26
MSX1P28360 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 AC087283.1-201ENST00000604029 1074 ntBASIC7.19□□□□□ -1.26
MSX1P28360 AC138035.1-203ENST00000604354 1066 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 AP001437.1-201ENST00000608783 456 ntBASIC7.19□□□□□ -1.26
MSX1P28360 Metazoa_SRP.123-201ENST00000616695 286 ntBASIC7.19□□□□□ -1.26
MSX1P28360 MIR6761-201ENST00000617899 72 ntBASIC7.19□□□□□ -1.26
MSX1P28360 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 AL591543.1-202ENST00000642095 4149 ntBASIC7.19□□□□□ -1.26
MSX1P28360 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 GJB6-205ENST00000636852 1840 ntAPPRIS P1 TSL 4 BASIC7.19□□□□□ -1.26
MSX1P28360 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 AL136298.2-201ENST00000556497 1570 ntBASIC7.19□□□□□ -1.26
MSX1P28360 BBS12-203ENST00000542236 3431 ntAPPRIS P1 TSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 ABCA17P-204ENST00000494925 3478 ntBASIC7.19□□□□□ -1.26
MSX1P28360 IL31RA-205ENST00000396836 2426 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 LPAR1-202ENST00000374430 2993 ntAPPRIS P2 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 CTD-2201I18.1-202ENST00000514042 2705 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 NCALD-203ENST00000395923 3808 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
MSX1P28360 THAP12P1-201ENST00000398672 2203 ntBASIC7.19□□□□□ -1.26
MSX1P28360 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC7.19□□□□□ -1.26
MSX1P28360 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSX1P28360 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 CYP1D1P-201ENST00000416662 1433 ntBASIC7.18□□□□□ -1.26
MSX1P28360 LDB2-203ENST00000502640 2626 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 RNASE9-209ENST00000557068 2703 ntAPPRIS P3 TSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 AC010894.3-201ENST00000442996 2400 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 PROM1-210ENST00000510224 4006 ntAPPRIS P3 TSL 5 BASIC7.18□□□□□ -1.26
MSX1P28360 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC7.18□□□□□ -1.26
MSX1P28360 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 HSP90AB2P-201ENST00000507090 2176 ntBASIC7.18□□□□□ -1.26
MSX1P28360 UBE2V2-207ENST00000523111 4373 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 U3.1-201ENST00000362500 215 ntBASIC7.18□□□□□ -1.26
MSX1P28360 RNU6-1085P-201ENST00000363576 107 ntBASIC7.18□□□□□ -1.26
MSX1P28360 NR1I3-203ENST00000367981 1076 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 MUC1-206ENST00000368390 804 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 MUC1-209ENST00000368396 516 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 MUC1-210ENST00000368398 729 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 Y_RNA.431-201ENST00000384086 102 ntBASIC7.18□□□□□ -1.26
MSX1P28360 RNA5SP297-201ENST00000391029 113 ntBASIC7.18□□□□□ -1.26
MSX1P28360 AAMDC-202ENST00000393427 531 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSX1P28360 SNRPEP2-201ENST00000397592 279 ntBASIC7.18□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms