Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COMMD3Q9UBI1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COMMD3Q9UBI1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 AC135050.7-201ENST00000624508 2218 ntBASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 TRIR-202ENST00000588213 841 ntTSL 3 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COMMD3Q9UBI1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
COMMD3Q9UBI1 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 MFF-208ENST00000409616 1247 ntTSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 RARRES2P1-201ENST00000474487 481 ntBASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COMMD3Q9UBI1 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.25■□□□□ 0.35
COMMD3Q9UBI1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms