Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 PLK5-205ENST00000642079 1969 ntBASIC21.56■■□□□ 1.04
HIPK3Q9H422 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 AC010653.2-201ENST00000623505 997 ntBASIC21.56■■□□□ 1.04
HIPK3Q9H422 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HIPK3Q9H422 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.56■■□□□ 1.04
HIPK3Q9H422 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AC007663.1-201ENST00000438948 1240 ntBASIC21.55■■□□□ 1.04
HIPK3Q9H422 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.55■■□□□ 1.04
HIPK3Q9H422 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HIPK3Q9H422 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 AC141257.4-201ENST00000634557 245 ntBASIC21.54■■□□□ 1.04
HIPK3Q9H422 AC136944.6-201ENST00000634818 245 ntBASIC21.54■■□□□ 1.04
HIPK3Q9H422 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HIPK3Q9H422 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.54■■□□□ 1.04
HIPK3Q9H422 FP700111.2-201ENST00000619190 1892 ntBASIC21.54■■□□□ 1.04
HIPK3Q9H422 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 PCED1CP-201ENST00000419887 785 ntBASIC21.53■■□□□ 1.04
HIPK3Q9H422 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HIPK3Q9H422 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
HIPK3Q9H422 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms