Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.2■□□□□ 0.5
C9orf40Q8IXQ3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 KRT18P16-201ENST00000510337 1294 ntBASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 AC066615.1-201ENST00000640911 628 ntBASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.19■□□□□ 0.5
C9orf40Q8IXQ3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.18■□□□□ 0.5
C9orf40Q8IXQ3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
C9orf40Q8IXQ3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 TUBB8P6-201ENST00000436895 1288 ntBASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 AC008550.1-201ENST00000511500 884 ntBASIC18.16■□□□□ 0.5
C9orf40Q8IXQ3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms