Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RAE1P78406 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RAE1P78406 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RAE1P78406 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.67■□□□□ 0.58
RAE1P78406 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.67■□□□□ 0.58
RAE1P78406 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RAE1P78406 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
RAE1P78406 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.67■□□□□ 0.58
RAE1P78406 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.67■□□□□ 0.58
RAE1P78406 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.67■□□□□ 0.58
RAE1P78406 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.67■□□□□ 0.58
RAE1P78406 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.67■□□□□ 0.58
RAE1P78406 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.67■□□□□ 0.58
RAE1P78406 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
RAE1P78406 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.67■□□□□ 0.58
RAE1P78406 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RAE1P78406 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RAE1P78406 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RAE1P78406 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.66■□□□□ 0.58
RAE1P78406 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.66■□□□□ 0.58
RAE1P78406 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.66■□□□□ 0.58
RAE1P78406 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.66■□□□□ 0.58
RAE1P78406 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.66■□□□□ 0.58
RAE1P78406 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.66■□□□□ 0.58
RAE1P78406 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.66■□□□□ 0.58
RAE1P78406 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.66■□□□□ 0.58
RAE1P78406 AC133041.1-202ENST00000642053 222 ntBASIC18.66■□□□□ 0.58
RAE1P78406 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.66■□□□□ 0.58
RAE1P78406 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.66■□□□□ 0.58
RAE1P78406 AL032819.2-201ENST00000624543 2162 ntBASIC18.66■□□□□ 0.58
RAE1P78406 AC087289.5-201ENST00000586076 3175 ntBASIC18.66■□□□□ 0.58
RAE1P78406 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
RAE1P78406 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RAE1P78406 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RAE1P78406 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.65■□□□□ 0.58
RAE1P78406 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RAE1P78406 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.65■□□□□ 0.58
RAE1P78406 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RAE1P78406 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
RAE1P78406 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
RAE1P78406 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RAE1P78406 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RAE1P78406 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RAE1P78406 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.65■□□□□ 0.58
RAE1P78406 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.64■□□□□ 0.58
RAE1P78406 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
RAE1P78406 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RAE1P78406 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.64■□□□□ 0.57
RAE1P78406 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.64■□□□□ 0.57
RAE1P78406 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.64■□□□□ 0.57
RAE1P78406 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.64■□□□□ 0.57
RAE1P78406 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.64■□□□□ 0.57
RAE1P78406 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
RAE1P78406 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.64■□□□□ 0.57
RAE1P78406 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RAE1P78406 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
RAE1P78406 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms