Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
RPL39P62891 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RPL39P62891 AC104581.1-202ENST00000635932 2618 ntBASIC13.9□□□□□ -0.18
RPL39P62891 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
RPL39P62891 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
RPL39P62891 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC13.9□□□□□ -0.18
RPL39P62891 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
RPL39P62891 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
RPL39P62891 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 AL049812.1-201ENST00000432563 2267 ntBASIC13.89□□□□□ -0.19
RPL39P62891 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC13.89□□□□□ -0.19
RPL39P62891 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
RPL39P62891 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC13.89□□□□□ -0.19
RPL39P62891 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
RPL39P62891 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
RPL39P62891 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC13.89□□□□□ -0.19
RPL39P62891 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 AC096631.2-201ENST00000436136 790 ntBASIC13.89□□□□□ -0.19
RPL39P62891 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
RPL39P62891 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC13.89□□□□□ -0.19
RPL39P62891 AF213884.3-201ENST00000563833 479 ntBASIC13.89□□□□□ -0.19
RPL39P62891 AC104187.1-201ENST00000607510 612 ntBASIC13.89□□□□□ -0.19
RPL39P62891 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RPL39P62891 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
RPL39P62891 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC13.89□□□□□ -0.19
RPL39P62891 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
RPL39P62891 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC13.89□□□□□ -0.19
RPL39P62891 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC13.88□□□□□ -0.19
RPL39P62891 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC13.88□□□□□ -0.19
RPL39P62891 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 EDA-201ENST00000338901 1233 ntBASIC13.88□□□□□ -0.19
RPL39P62891 MIR939-201ENST00000401314 82 ntBASIC13.88□□□□□ -0.19
RPL39P62891 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC13.88□□□□□ -0.19
RPL39P62891 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC13.88□□□□□ -0.19
RPL39P62891 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC13.88□□□□□ -0.19
RPL39P62891 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC13.88□□□□□ -0.19
RPL39P62891 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 AP001160.3-201ENST00000601484 763 ntBASIC13.88□□□□□ -0.19
RPL39P62891 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC13.88□□□□□ -0.19
RPL39P62891 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
RPL39P62891 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 RBM17P2-201ENST00000616397 1405 ntBASIC13.88□□□□□ -0.19
RPL39P62891 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
RPL39P62891 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC13.87□□□□□ -0.19
RPL39P62891 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
RPL39P62891 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC13.87□□□□□ -0.19
RPL39P62891 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
RPL39P62891 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC13.87□□□□□ -0.19
RPL39P62891 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 IRS3P-201ENST00000223076 1006 ntBASIC13.87□□□□□ -0.19
RPL39P62891 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
RPL39P62891 AC091305.1-201ENST00000479476 895 ntBASIC13.87□□□□□ -0.19
RPL39P62891 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC13.87□□□□□ -0.19
RPL39P62891 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC13.87□□□□□ -0.19
RPL39P62891 AC243732.1-201ENST00000612648 864 ntBASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms