Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.98■□□□□ 0.15
CDX1P47902 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
CDX1P47902 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.98■□□□□ 0.15
CDX1P47902 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC15.98■□□□□ 0.15
CDX1P47902 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 LSM12P1-201ENST00000411836 588 ntBASIC15.98■□□□□ 0.15
CDX1P47902 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
CDX1P47902 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 KLF13-207ENST00000560473 489 ntTSL 3 BASIC15.98■□□□□ 0.15
CDX1P47902 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC15.98■□□□□ 0.15
CDX1P47902 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC15.98■□□□□ 0.15
CDX1P47902 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.98■□□□□ 0.15
CDX1P47902 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 DYM-203ENST00000442713 2147 ntTSL 2 BASIC15.98■□□□□ 0.15
CDX1P47902 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDX1P47902 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
CDX1P47902 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 AC112907.3-201ENST00000577781 2400 ntBASIC15.97■□□□□ 0.15
CDX1P47902 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC15.97■□□□□ 0.15
CDX1P47902 AC097658.1-201ENST00000475555 843 ntBASIC15.97■□□□□ 0.15
CDX1P47902 CD99P1-205ENST00000527459 561 ntBASIC15.97■□□□□ 0.15
CDX1P47902 CYP2T3P-201ENST00000601990 817 ntBASIC15.97■□□□□ 0.15
CDX1P47902 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC15.97■□□□□ 0.15
CDX1P47902 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CDX1P47902 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC15.97■□□□□ 0.15
CDX1P47902 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CDX1P47902 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CDX1P47902 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CDX1P47902 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CDX1P47902 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
CDX1P47902 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC15.96■□□□□ 0.15
CDX1P47902 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC15.96■□□□□ 0.15
CDX1P47902 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CDX1P47902 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.15
CDX1P47902 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CDX1P47902 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CDX1P47902 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
CDX1P47902 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
CDX1P47902 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CDX1P47902 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC15.95■□□□□ 0.14
CDX1P47902 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CDX1P47902 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CDX1P47902 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms