Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HOXA9P31269 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HOXA9P31269 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HOXA9P31269 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXA9P31269 ECEL1P2-202ENST00000465689 757 ntBASIC20.54■□□□□ 0.88
HOXA9P31269 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
HOXA9P31269 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HOXA9P31269 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXA9P31269 FAM87A-204ENST00000613235 858 ntBASIC20.54■□□□□ 0.88
HOXA9P31269 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.54■□□□□ 0.88
HOXA9P31269 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.54■□□□□ 0.88
HOXA9P31269 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
HOXA9P31269 TMEM179-206ENST00000616017 1645 ntBASIC20.53■□□□□ 0.88
HOXA9P31269 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXA9P31269 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
HOXA9P31269 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXA9P31269 SLC25A1P4-201ENST00000567977 778 ntBASIC20.53■□□□□ 0.88
HOXA9P31269 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.53■□□□□ 0.88
HOXA9P31269 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
HOXA9P31269 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.53■□□□□ 0.88
HOXA9P31269 AC006011.2-201ENST00000621313 1158 ntBASIC20.53■□□□□ 0.88
HOXA9P31269 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
HOXA9P31269 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXA9P31269 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXA9P31269 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HOXA9P31269 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
HOXA9P31269 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.53■□□□□ 0.88
HOXA9P31269 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.53■□□□□ 0.88
HOXA9P31269 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXA9P31269 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXA9P31269 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
HOXA9P31269 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
HOXA9P31269 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HOXA9P31269 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.52■□□□□ 0.88
HOXA9P31269 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.52■□□□□ 0.88
HOXA9P31269 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 AC026310.3-201ENST00000625186 2373 ntBASIC20.51■□□□□ 0.87
HOXA9P31269 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXA9P31269 HMGA1P5-201ENST00000412453 271 ntBASIC20.51■□□□□ 0.87
HOXA9P31269 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXA9P31269 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.51■□□□□ 0.87
HOXA9P31269 NTF6B-201ENST00000591913 560 ntBASIC20.51■□□□□ 0.87
HOXA9P31269 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
HOXA9P31269 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.51■□□□□ 0.87
HOXA9P31269 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXA9P31269 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HOXA9P31269 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXA9P31269 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.51■□□□□ 0.87
HOXA9P31269 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXA9P31269 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.5■□□□□ 0.87
HOXA9P31269 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.5■□□□□ 0.87
HOXA9P31269 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 SLC25A1P2-201ENST00000430693 912 ntBASIC20.5■□□□□ 0.87
HOXA9P31269 BX664615.1-201ENST00000443558 458 ntBASIC20.5■□□□□ 0.87
HOXA9P31269 FAM207BP-201ENST00000447172 505 ntBASIC20.5■□□□□ 0.87
HOXA9P31269 AC008040.2-201ENST00000461049 708 ntBASIC20.5■□□□□ 0.87
HOXA9P31269 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.5■□□□□ 0.87
HOXA9P31269 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
HOXA9P31269 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.5■□□□□ 0.87
HOXA9P31269 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HOXA9P31269 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HOXA9P31269 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms