Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC1P18827 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC1P18827 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.73■□□□□ 0.59
SDC1P18827 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.73■□□□□ 0.59
SDC1P18827 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC1P18827 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC1P18827 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC1P18827 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC1P18827 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SDC1P18827 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.73■□□□□ 0.59
SDC1P18827 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SDC1P18827 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.72■□□□□ 0.59
SDC1P18827 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 DUSP5P2-201ENST00000426873 1033 ntBASIC18.72■□□□□ 0.59
SDC1P18827 AC073210.2-201ENST00000430369 194 ntBASIC18.72■□□□□ 0.59
SDC1P18827 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.72■□□□□ 0.59
SDC1P18827 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.72■□□□□ 0.59
SDC1P18827 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 AC083906.2-201ENST00000511578 360 ntBASIC18.72■□□□□ 0.59
SDC1P18827 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 AC005829.2-201ENST00000571422 1056 ntBASIC18.72■□□□□ 0.59
SDC1P18827 AL121832.2-201ENST00000610979 668 ntBASIC18.72■□□□□ 0.59
SDC1P18827 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SDC1P18827 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SDC1P18827 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC1P18827 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC1P18827 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.71■□□□□ 0.59
SDC1P18827 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SDC1P18827 AC006970.2-201ENST00000450065 779 ntBASIC18.71■□□□□ 0.59
SDC1P18827 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SDC1P18827 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC1P18827 TFP1-202ENST00000475455 1573 ntBASIC18.71■□□□□ 0.59
SDC1P18827 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC1P18827 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.71■□□□□ 0.58
SDC1P18827 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.71■□□□□ 0.58
SDC1P18827 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.7■□□□□ 0.58
SDC1P18827 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.7■□□□□ 0.58
SDC1P18827 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC1P18827 AL390719.1-204ENST00000412397 1219 ntBASIC18.7■□□□□ 0.58
SDC1P18827 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDC1P18827 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms