Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A2P12110 AC026271.2-201ENST00000428091 497 ntBASIC19.43■□□□□ 0.7
COL6A2P12110 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A2P12110 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A2P12110 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A2P12110 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A2P12110 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A2P12110 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.42■□□□□ 0.7
COL6A2P12110 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 LINC01465-201ENST00000408887 1940 ntBASIC19.42■□□□□ 0.7
COL6A2P12110 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
COL6A2P12110 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A2P12110 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A2P12110 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL6A2P12110 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A2P12110 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 AC018553.1-201ENST00000616682 1458 ntBASIC19.41■□□□□ 0.7
COL6A2P12110 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A2P12110 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 AC116351.2-201ENST00000606540 1585 ntBASIC19.41■□□□□ 0.7
COL6A2P12110 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A2P12110 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A2P12110 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL6A2P12110 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL6A2P12110 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
COL6A2P12110 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A2P12110 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL6A2P12110 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
COL6A2P12110 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A2P12110 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A2P12110 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A2P12110 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A2P12110 AC093787.1-201ENST00000450396 207 ntBASIC19.4■□□□□ 0.7
COL6A2P12110 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.4■□□□□ 0.7
COL6A2P12110 AC133552.2-202ENST00000575694 574 ntBASIC19.4■□□□□ 0.7
COL6A2P12110 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A2P12110 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A2P12110 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
COL6A2P12110 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A2P12110 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL6A2P12110 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms