Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC23.79■■□□□ 1.4
COL1A1P02452 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC23.78■■□□□ 1.4
COL1A1P02452 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.78■■□□□ 1.4
COL1A1P02452 GABARAPL3-202ENST00000624044 1851 ntBASIC23.78■■□□□ 1.4
COL1A1P02452 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
COL1A1P02452 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC23.78■■□□□ 1.4
COL1A1P02452 PRR31-201ENST00000371629 978 ntTSL 2 BASIC23.78■■□□□ 1.4
COL1A1P02452 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC23.78■■□□□ 1.4
COL1A1P02452 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.78■■□□□ 1.4
COL1A1P02452 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL1A1P02452 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
COL1A1P02452 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.77■■□□□ 1.4
COL1A1P02452 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC23.77■■□□□ 1.4
COL1A1P02452 AC011506.1-201ENST00000474329 610 ntBASIC23.77■■□□□ 1.4
COL1A1P02452 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL1A1P02452 CLDN5-201ENST00000403084 2357 ntBASIC23.77■■□□□ 1.4
COL1A1P02452 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC23.77■■□□□ 1.4
COL1A1P02452 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.77■■□□□ 1.4
COL1A1P02452 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC23.76■■□□□ 1.39
COL1A1P02452 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC23.76■■□□□ 1.39
COL1A1P02452 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC23.76■■□□□ 1.39
COL1A1P02452 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.76■■□□□ 1.39
COL1A1P02452 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.76■■□□□ 1.39
COL1A1P02452 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC23.76■■□□□ 1.39
COL1A1P02452 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.76■■□□□ 1.39
COL1A1P02452 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL1A1P02452 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL1A1P02452 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.76■■□□□ 1.39
COL1A1P02452 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL1A1P02452 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
COL1A1P02452 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.75■■□□□ 1.39
COL1A1P02452 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
COL1A1P02452 AL031985.4-201ENST00000642138 673 ntBASIC23.75■■□□□ 1.39
COL1A1P02452 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 AP001271.2-201ENST00000624018 1556 ntBASIC23.75■■□□□ 1.39
COL1A1P02452 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.75■■□□□ 1.39
COL1A1P02452 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL1A1P02452 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
COL1A1P02452 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.74■■□□□ 1.39
COL1A1P02452 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.74■■□□□ 1.39
COL1A1P02452 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
COL1A1P02452 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
COL1A1P02452 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC23.74■■□□□ 1.39
COL1A1P02452 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
COL1A1P02452 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC23.73■■□□□ 1.39
COL1A1P02452 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
COL1A1P02452 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
COL1A1P02452 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.73■■□□□ 1.39
COL1A1P02452 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
COL1A1P02452 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 AL137013.1-201ENST00000432946 1228 ntBASIC23.73■■□□□ 1.39
COL1A1P02452 DGCR10-201ENST00000609839 495 ntBASIC23.73■■□□□ 1.39
COL1A1P02452 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
COL1A1P02452 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
COL1A1P02452 RCC2P6-201ENST00000526625 1557 ntBASIC23.72■■□□□ 1.39
COL1A1P02452 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms