Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SLC25A3P1-201ENST00000443844 931 ntBASIC19.26■□□□□ 0.67
SDC3O75056 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC19.26■□□□□ 0.67
SDC3O75056 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.26■□□□□ 0.67
SDC3O75056 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.26■□□□□ 0.67
SDC3O75056 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SDC3O75056 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC3O75056 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SDC3O75056 AL590326.2-201ENST00000625139 305 ntBASIC19.26■□□□□ 0.67
SDC3O75056 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC19.26■□□□□ 0.67
SDC3O75056 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SDC3O75056 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.25■□□□□ 0.67
SDC3O75056 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.25■□□□□ 0.67
SDC3O75056 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC3O75056 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.25■□□□□ 0.67
SDC3O75056 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.25■□□□□ 0.67
SDC3O75056 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.25■□□□□ 0.67
SDC3O75056 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.25■□□□□ 0.67
SDC3O75056 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.25■□□□□ 0.67
SDC3O75056 B3GAT3P1-201ENST00000471720 806 ntBASIC19.25■□□□□ 0.67
SDC3O75056 AC011506.1-201ENST00000474329 610 ntBASIC19.25■□□□□ 0.67
SDC3O75056 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.25■□□□□ 0.67
SDC3O75056 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 PHGDH-210ENST00000641115 1638 ntBASIC19.25■□□□□ 0.67
SDC3O75056 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
SDC3O75056 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.25■□□□□ 0.67
SDC3O75056 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.24■□□□□ 0.67
SDC3O75056 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.24■□□□□ 0.67
SDC3O75056 KRT18P16-201ENST00000510337 1294 ntBASIC19.24■□□□□ 0.67
SDC3O75056 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.24■□□□□ 0.67
SDC3O75056 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.24■□□□□ 0.67
SDC3O75056 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.24■□□□□ 0.67
SDC3O75056 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SDC3O75056 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC3O75056 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC3O75056 CRYGFP-201ENST00000418459 633 ntBASIC19.23■□□□□ 0.67
SDC3O75056 AC004980.1-204ENST00000429707 299 ntBASIC19.23■□□□□ 0.67
SDC3O75056 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 AC026271.3-201ENST00000571884 352 ntBASIC19.23■□□□□ 0.67
SDC3O75056 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.23■□□□□ 0.67
SDC3O75056 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SDC3O75056 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.23■□□□□ 0.67
SDC3O75056 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.22■□□□□ 0.67
SDC3O75056 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.22■□□□□ 0.67
SDC3O75056 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.22■□□□□ 0.67
SDC3O75056 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.22■□□□□ 0.67
SDC3O75056 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 AC010203.1-204ENST00000548782 407 ntBASIC19.22■□□□□ 0.67
SDC3O75056 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.22■□□□□ 0.67
SDC3O75056 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.22■□□□□ 0.67
SDC3O75056 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SDC3O75056 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SDC3O75056 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SDC3O75056 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.21■□□□□ 0.67
SDC3O75056 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.21■□□□□ 0.67
SDC3O75056 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SDC3O75056 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.21■□□□□ 0.67
SDC3O75056 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms