Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.07■□□□□ 0.8
HOXC11O43248 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
HOXC11O43248 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXC11O43248 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXC11O43248 AC011506.1-201ENST00000474329 610 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXC11O43248 AP005242.2-201ENST00000580065 1175 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 AC010947.1-201ENST00000623454 693 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HOXC11O43248 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HOXC11O43248 HLA-A-209ENST00000638375 975 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXC11O43248 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 AP001271.2-201ENST00000624018 1556 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXC11O43248 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
HOXC11O43248 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC11O43248 LINC01568-207ENST00000641790 1380 ntBASIC20.07■□□□□ 0.8
HOXC11O43248 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HOXC11O43248 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HOXC11O43248 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
HOXC11O43248 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
HOXC11O43248 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC11O43248 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC11O43248 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.06■□□□□ 0.8
HOXC11O43248 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HOXC11O43248 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.06■□□□□ 0.8
HOXC11O43248 AC005363.2-201ENST00000618631 242 ntBASIC20.06■□□□□ 0.8
HOXC11O43248 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
HOXC11O43248 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC11O43248 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HOXC11O43248 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
HOXC11O43248 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
HOXC11O43248 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC11O43248 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC11O43248 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.05■□□□□ 0.8
HOXC11O43248 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.05■□□□□ 0.8
HOXC11O43248 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HOXC11O43248 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
HOXC11O43248 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
HOXC11O43248 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 TMPOP1-202ENST00000424642 1267 ntBASIC20.04■□□□□ 0.8
HOXC11O43248 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXC11O43248 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC11O43248 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.04■□□□□ 0.8
HOXC11O43248 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.04■□□□□ 0.8
HOXC11O43248 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.04■□□□□ 0.8
HOXC11O43248 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC11O43248 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.04■□□□□ 0.8
HOXC11O43248 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
HOXC11O43248 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
HOXC11O43248 KRT18P22-201ENST00000402024 1347 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
HOXC11O43248 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 KRT8P8-201ENST00000434750 1448 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.03■□□□□ 0.8
HOXC11O43248 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.03■□□□□ 0.8
HOXC11O43248 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HOXC11O43248 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms