Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 AC141586.5-201ENST00000624546 2050 ntBASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CHKB-CPT1BH3BT56 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.66
CHKB-CPT1BH3BT56 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 AL049796.1-201ENST00000565336 1766 ntBASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
CHKB-CPT1BH3BT56 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 SSSCA1-AS1-201ENST00000567594 614 ntBASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 MIR3665-201ENST00000578708 105 ntBASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC10.94□□□□□ -0.66
CHKB-CPT1BH3BT56 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms