Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP003469.1-202ENST00000521884 478 ntTSL 2 BASIC5.7□□□□□ -1.5
COL6A3P12111 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 AC011477.5-201ENST00000586571 259 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC5.7□□□□□ -1.5
COL6A3P12111 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.7□□□□□ -1.5
COL6A3P12111 AC099494.2-201ENST00000623371 978 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 REL-201ENST00000295025 11255 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 MON2-214ENST00000641654 10382 ntBASIC5.7□□□□□ -1.5
COL6A3P12111 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 UTY-205ENST00000382896 6661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 MYO7B-202ENST00000409816 6694 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 UTY-211ENST00000540140 6652 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 UTY-214ENST00000617789 6682 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 MTMR10-201ENST00000435680 4961 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 ATP7B-206ENST00000448424 6404 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 ZNF286A-203ENST00000421016 5541 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 PBRM1-201ENST00000296302 5145 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL6A3P12111 DIP2C-202ENST00000381496 7749 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC5.7□□□□□ -1.5
COL6A3P12111 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A3P12111 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.69□□□□□ -1.5
COL6A3P12111 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 MCPH1-201ENST00000344683 8039 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 MTCO1P15-201ENST00000529569 1526 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 TEK-201ENST00000380036 4760 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A3P12111 RNA5SP447-201ENST00000363749 119 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL6A3P12111 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A3P12111 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 AC011005.3-201ENST00000491624 395 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 RN7SKP83-201ENST00000516512 178 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A3P12111 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL6A3P12111 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.69□□□□□ -1.5
COL6A3P12111 BACH2-201ENST00000257749 9113 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC5.69□□□□□ -1.5
COL6A3P12111 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
COL6A3P12111 OR1L6-202ENST00000373684 1044 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 MIR199B-201ENST00000384849 110 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 ATP5F1P3-201ENST00000397213 657 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 PTCD2P2-201ENST00000415579 1095 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
COL6A3P12111 SPTBN1-201ENST00000333896 9075 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL6A3P12111 AC022905.1-201ENST00000503430 3048 ntBASIC5.69□□□□□ -1.5
COL6A3P12111 CCR9-201ENST00000355983 2653 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 PLD5-208ENST00000536534 8721 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 KARSP3-201ENST00000571212 1504 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 SOGA3-207ENST00000481848 11464 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 PRR26-201ENST00000381489 7250 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 LTBP1-202ENST00000404525 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL6A3P12111 MIR541-201ENST00000401360 84 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A3P12111 AP005230.1-204ENST00000579097 779 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A3P12111 AC004232.3-201ENST00000622977 525 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 KIAA1217-207ENST00000396445 5706 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 PRRC2C-204ENST00000426496 10175 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 COL4A4-201ENST00000396625 9895 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL6A3P12111 PDCD6IP-201ENST00000307296 6161 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
COL6A3P12111 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 MIR130A-201ENST00000385274 89 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 AC018450.1-202ENST00000465880 529 ntTSL 4 BASIC5.68□□□□□ -1.5
COL6A3P12111 HMGB1P44-201ENST00000508597 572 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A3P12111 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC5.68□□□□□ -1.5
COL6A3P12111 AL513327.3-201ENST00000602618 469 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 AL121873.1-201ENST00000616013 524 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 AC110373.1-201ENST00000505994 3505 ntBASIC5.68□□□□□ -1.5
COL6A3P12111 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL6A3P12111 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC5.68□□□□□ -1.5
COL6A3P12111 CDK6-201ENST00000265734 11612 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 73.1 ms