RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 PELP1Q8IZL8 1130 aaKnown RBP17.11■□□□□ 0.33
COL4A4-201ENST00000396625 DCAF8L2P0C7V8 631 aa16.82■□□□□ 0.28
COL4A4-201ENST00000396625 MYT1Q01538 1121 aa16.54■□□□□ 0.24
COL4A4-201ENST00000396625 ERICH6Q7L0X2 663 aa16.43■□□□□ 0.22
COL4A4-201ENST00000396625 CCER1Q8TC90 406 aaPredicted RBP16.25■□□□□ 0.19
COL4A4-201ENST00000396625 SUPT5HO00267 1087 aaKnown RBP16.12■□□□□ 0.17
COL4A4-201ENST00000396625 EHMT2Q96KQ7 1210 aa16.06■□□□□ 0.16
COL4A4-201ENST00000396625 CENPBP07199 599 aaPredicted RBP15.99■□□□□ 0.15
COL4A4-201ENST00000396625 APLP2Q06481 763 aa15.94■□□□□ 0.14
COL4A4-201ENST00000396625 NEFLP07196 543 aa15.76■□□□□ 0.11
COL4A4-201ENST00000396625 SHROOM4Q9ULL8 1493 aa15.67■□□□□ 0.1
COL4A4-201ENST00000396625 TTBK1Q5TCY1 1321 aaPredicted RBP15.66■□□□□ 0.1
COL4A4-201ENST00000396625 YTHDC1Q96MU7 727 aaKnown RBP15.62■□□□□ 0.09
COL4A4-201ENST00000396625 PCGF6Q9BYE7 350 aa15.62■□□□□ 0.09
COL4A4-201ENST00000396625 FAM9AQ8IZU1 332 aaPredicted RBP15.6■□□□□ 0.09
COL4A4-201ENST00000396625 DAXXQ9UER7 740 aaPredicted RBP15.6■□□□□ 0.09
COL4A4-201ENST00000396625 ZEB1P37275 1124 aaPredicted RBP15.54■□□□□ 0.08
COL4A4-201ENST00000396625 NISCHQ9Y2I1 1504 aa15.45■□□□□ 0.06
COL4A4-201ENST00000396625 RANGAP1P46060 587 aaPredicted RBP15.25■□□□□ 0.03
COL4A4-201ENST00000396625 RTL5Q5HYW3 569 aaPredicted RBP15.23■□□□□ 0.03
COL4A4-201ENST00000396625 ZNF316A6NFI3 1004 aaPredicted RBP15.21■□□□□ 0.03
COL4A4-201ENST00000396625 ATP1B4Q9UN42 357 aaPredicted RBP15.18■□□□□ 0.02
COL4A4-201ENST00000396625 CLSPNQ9HAW4 1339 aa14.97□□□□□ -0.01
COL4A4-201ENST00000396625 POLR3GLQ9BT43 218 aa14.94□□□□□ -0.02
COL4A4-201ENST00000396625 UBTFP17480 764 aaKnown RBP14.93□□□□□ -0.02
COL4A4-201ENST00000396625 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
COL4A4-201ENST00000396625 CNGB1Q14028 1251 aaPredicted RBP14.78□□□□□ -0.04
COL4A4-201ENST00000396625 HRCP23327 699 aa14.76□□□□□ -0.05
COL4A4-201ENST00000396625 PPARGC1BQ86YN6 1023 aaKnown RBP14.74□□□□□ -0.05
COL4A4-201ENST00000396625 SLC4A1APQ9BWU0 796 aaKnown RBP14.73□□□□□ -0.05
COL4A4-201ENST00000396625 TRIM26Q12899 539 aaPredicted RBP14.7□□□□□ -0.06
COL4A4-201ENST00000396625 MYT1LQ9UL68 1186 aa14.67□□□□□ -0.06
COL4A4-201ENST00000396625 GLIPR1L2Q4G1C9 344 aa14.64□□□□□ -0.07
COL4A4-201ENST00000396625 EIF5BO60841 1220 aaKnown RBP14.63□□□□□ -0.07
COL4A4-201ENST00000396625 ITGAEP38570 1179 aa14.63□□□□□ -0.07
COL4A4-201ENST00000396625 CHIC1Q5VXU3 224 aa14.6□□□□□ -0.07
COL4A4-201ENST00000396625 ZBTB47Q9UFB7 747 aaPredicted RBP14.59□□□□□ -0.07
COL4A4-201ENST00000396625 CDK11AQ9UQ88 783 aaPredicted RBP14.56□□□□□ -0.08
COL4A4-201ENST00000396625 BCANQ96GW7 911 aa14.55□□□□□ -0.08
COL4A4-201ENST00000396625 DIEXFQ68CQ4 756 aaKnown RBP14.54□□□□□ -0.08
COL4A4-201ENST00000396625 ANP32BQ92688 251 aaKnown RBP14.51□□□□□ -0.09
COL4A4-201ENST00000396625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.49□□□□□ -0.09
COL4A4-201ENST00000396625 HNRNPUL2Q1KMD3 747 aaKnown RBP14.49□□□□□ -0.09
COL4A4-201ENST00000396625 ANP32AP39687 249 aaKnown RBP14.47□□□□□ -0.09
COL4A4-201ENST00000396625 BCL11AQ9H165 835 aa14.45□□□□□ -0.1
COL4A4-201ENST00000396625 CANXP27824 592 aaKnown RBP14.44□□□□□ -0.1
COL4A4-201ENST00000396625 GTF3C3Q9Y5Q9 886 aa14.42□□□□□ -0.1
COL4A4-201ENST00000396625 SLC24A1O60721 1099 aa14.33□□□□□ -0.11
COL4A4-201ENST00000396625 HSP90AA1P07900 732 aaKnown RBP14.32□□□□□ -0.12
COL4A4-201ENST00000396625 NPM2Q86SE8 214 aaKnown RBP14.31□□□□□ -0.12
COL4A4-201ENST00000396625 ANP32CO43423 234 aa14.29□□□□□ -0.12
COL4A4-201ENST00000396625 NEFMP07197 916 aa14.17□□□□□ -0.14
COL4A4-201ENST00000396625 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
COL4A4-201ENST00000396625 FAM50AQ14320 339 aaKnown RBP14.17□□□□□ -0.14
COL4A4-201ENST00000396625 ZNF326Q5BKZ1 582 aaKnown RBP14.17□□□□□ -0.14
COL4A4-201ENST00000396625 UPF2Q9HAU5 1272 aaKnown RBP14.17□□□□□ -0.14
COL4A4-201ENST00000396625 ARXQ96QS3 562 aa14.15□□□□□ -0.14
COL4A4-201ENST00000396625 NBR1Q14596 966 aa14.14□□□□□ -0.15
COL4A4-201ENST00000396625 TRIM52Q96A61 297 aa14.14□□□□□ -0.15
COL4A4-201ENST00000396625 CDK11BP21127 795 aaKnown RBP14.1□□□□□ -0.15
COL4A4-201ENST00000396625 TNNT2P45379 298 aaPredicted RBP14.1□□□□□ -0.15
COL4A4-201ENST00000396625 LOC105371045A0A1W2PR82 267 aa14.07□□□□□ -0.16
COL4A4-201ENST00000396625 ACIN1Q9UKV3 1341 aaKnown RBP14.03□□□□□ -0.16
COL4A4-201ENST00000396625 FKBP8Q14318 412 aa13.94□□□□□ -0.18
COL4A4-201ENST00000396625 TRIM44Q96DX7 344 aaPredicted RBP13.92□□□□□ -0.18
COL4A4-201ENST00000396625 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.84□□□□□ -0.19
COL4A4-201ENST00000396625 CCDC136Q96JN2 1154 aa13.83□□□□□ -0.19
COL4A4-201ENST00000396625 PTMAP06454 111 aaKnown RBP13.81□□□□□ -0.2
COL4A4-201ENST00000396625 DNTTIP2Q5QJE6 756 aaKnown RBP13.8□□□□□ -0.2
COL4A4-201ENST00000396625 NCLP19338 710 aaKnown RBP13.8□□□□□ -0.2
COL4A4-201ENST00000396625 NAP1L5Q96NT1 182 aaPredicted RBP13.79□□□□□ -0.2
COL4A4-201ENST00000396625 BECN1Q14457 450 aa13.78□□□□□ -0.2
COL4A4-201ENST00000396625 MYH16Q9H6N6 1097 aa13.78□□□□□ -0.2
COL4A4-201ENST00000396625 HNRNPUQ00839 825 aaKnown RBP eCLIP13.78□□□□□ -0.2
COL4A4-201ENST00000396625 ANP32EQ9BTT0 268 aa13.78□□□□□ -0.2
COL4A4-201ENST00000396625 GOLGA6L22H0YM25 854 aa13.76□□□□□ -0.21
COL4A4-201ENST00000396625 ZRSR1Q15695 479 aaKnown RBP13.76□□□□□ -0.21
COL4A4-201ENST00000396625 DDRGK1Q96HY6 314 aa13.74□□□□□ -0.21
COL4A4-201ENST00000396625 AMER1Q5JTC6 1135 aaPredicted RBP13.73□□□□□ -0.21
COL4A4-201ENST00000396625 FAM9BQ8IZU0 186 aa13.71□□□□□ -0.21
COL4A4-201ENST00000396625 ERICH6BQ5W0A0 696 aa13.7□□□□□ -0.22
COL4A4-201ENST00000396625 SALL2Q9Y467 1007 aaPredicted RBP13.67□□□□□ -0.22
COL4A4-201ENST00000396625 TONSLQ96HA7 1378 aa13.66□□□□□ -0.22
COL4A4-201ENST00000396625 RTN4Q9NQC3 1192 aaKnown RBP13.66□□□□□ -0.22
COL4A4-201ENST00000396625 GOLGA6L6A8MZA4 724 aa13.65□□□□□ -0.22
COL4A4-201ENST00000396625 TPRNQ4KMQ1 711 aa13.63□□□□□ -0.23
COL4A4-201ENST00000396625 TULP1O00294 542 aaPredicted RBP13.63□□□□□ -0.23
COL4A4-201ENST00000396625 WDR43Q15061 677 aaKnown RBP eCLIP13.61□□□□□ -0.23
COL4A4-201ENST00000396625 CHAF1AQ13111 956 aaPredicted RBP13.61□□□□□ -0.23
COL4A4-201ENST00000396625 TMC1Q8TDI8 760 aa13.6□□□□□ -0.23
COL4A4-201ENST00000396625 CASC1Q6TDU7 716 aa13.59□□□□□ -0.23
COL4A4-201ENST00000396625 IRX6P78412 446 aaPredicted RBP13.58□□□□□ -0.24
COL4A4-201ENST00000396625 ESF1Q9H501 851 aaKnown RBP13.55□□□□□ -0.24
COL4A4-201ENST00000396625 STAG3Q9UJ98 1225 aa13.55□□□□□ -0.24
COL4A4-201ENST00000396625 NRDCO43847 1150 aa13.54□□□□□ -0.24
COL4A4-201ENST00000396625 DDX10Q13206 875 aaKnown RBP13.53□□□□□ -0.24
COL4A4-201ENST00000396625 A0A0G2JS52 829 aa13.51□□□□□ -0.25
COL4A4-201ENST00000396625 PLCB2Q00722 1185 aa13.51□□□□□ -0.25
COL4A4-201ENST00000396625 ZNF777Q9ULD5 760 aaPredicted RBP13.5□□□□□ -0.25
COL4A4-201ENST00000396625 ARID3CA6NKF2 412 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms