RNA–Protein interactions for RNA: ENST00000333896.5

SPTBN1-201, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 1 (best) BASIC

Gene SPTBN1, Length 9,075 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-201ENST00000333896 MYT1Q01538 1121 aa17.66■□□□□ 0.42
SPTBN1-201ENST00000333896 PELP1Q8IZL8 1130 aaKnown RBP17.45■□□□□ 0.38
SPTBN1-201ENST00000333896 ERICH6Q7L0X2 663 aa16.47■□□□□ 0.23
SPTBN1-201ENST00000333896 DCAF8L2P0C7V8 631 aa16.42■□□□□ 0.22
SPTBN1-201ENST00000333896 TTBK1Q5TCY1 1321 aaPredicted RBP16.32■□□□□ 0.2
SPTBN1-201ENST00000333896 CCER1Q8TC90 406 aaPredicted RBP16.27■□□□□ 0.19
SPTBN1-201ENST00000333896 CENPBP07199 599 aaPredicted RBP16.23■□□□□ 0.19
SPTBN1-201ENST00000333896 ZEB1P37275 1124 aaPredicted RBP16.04■□□□□ 0.16
SPTBN1-201ENST00000333896 YTHDC1Q96MU7 727 aaKnown RBP15.98■□□□□ 0.15
SPTBN1-201ENST00000333896 EHMT2Q96KQ7 1210 aa15.87■□□□□ 0.13
SPTBN1-201ENST00000333896 SUPT5HO00267 1087 aaKnown RBP15.71■□□□□ 0.11
SPTBN1-201ENST00000333896 APLP2Q06481 763 aa15.6■□□□□ 0.09
SPTBN1-201ENST00000333896 NEFLP07196 543 aa15.59■□□□□ 0.09
SPTBN1-201ENST00000333896 DAXXQ9UER7 740 aaPredicted RBP15.52■□□□□ 0.07
SPTBN1-201ENST00000333896 PCGF6Q9BYE7 350 aa15.48■□□□□ 0.07
SPTBN1-201ENST00000333896 HRCP23327 699 aa15.31■□□□□ 0.04
SPTBN1-201ENST00000333896 RANGAP1P46060 587 aaPredicted RBP15.28■□□□□ 0.04
SPTBN1-201ENST00000333896 FAM9AQ8IZU1 332 aaPredicted RBP15.22■□□□□ 0.03
SPTBN1-201ENST00000333896 RTL5Q5HYW3 569 aaPredicted RBP15.2■□□□□ 0.02
SPTBN1-201ENST00000333896 GLIPR1L2Q4G1C9 344 aa15.18■□□□□ 0.02
SPTBN1-201ENST00000333896 MYT1LQ9UL68 1186 aa15.14■□□□□ 0.01
SPTBN1-201ENST00000333896 NISCHQ9Y2I1 1504 aa15.12■□□□□ 0.01
SPTBN1-201ENST00000333896 SHROOM4Q9ULL8 1493 aa15.12■□□□□ 0.01
SPTBN1-201ENST00000333896 ZNF316A6NFI3 1004 aaPredicted RBP15.11■□□□□ 0.01
SPTBN1-201ENST00000333896 CLSPNQ9HAW4 1339 aa15.01□□□□□ -0.01
SPTBN1-201ENST00000333896 TRIM26Q12899 539 aaPredicted RBP14.99□□□□□ -0.01
SPTBN1-201ENST00000333896 ATP1B4Q9UN42 357 aaPredicted RBP14.96□□□□□ -0.01
SPTBN1-201ENST00000333896 POLR3GLQ9BT43 218 aa14.79□□□□□ -0.04
SPTBN1-201ENST00000333896 EIF5BO60841 1220 aaKnown RBP14.74□□□□□ -0.05
SPTBN1-201ENST00000333896 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
SPTBN1-201ENST00000333896 GTF3C3Q9Y5Q9 886 aa14.71□□□□□ -0.05
SPTBN1-201ENST00000333896 DIEXFQ68CQ4 756 aaKnown RBP14.71□□□□□ -0.05
SPTBN1-201ENST00000333896 CDK11AQ9UQ88 783 aaPredicted RBP14.63□□□□□ -0.07
SPTBN1-201ENST00000333896 ACIN1Q9UKV3 1341 aaKnown RBP14.62□□□□□ -0.07
SPTBN1-201ENST00000333896 SLC4A1APQ9BWU0 796 aaKnown RBP14.58□□□□□ -0.07
SPTBN1-201ENST00000333896 UBTFP17480 764 aaKnown RBP14.54□□□□□ -0.08
SPTBN1-201ENST00000333896 PPARGC1BQ86YN6 1023 aaKnown RBP14.52□□□□□ -0.09
SPTBN1-201ENST00000333896 ANP32AP39687 249 aaKnown RBP14.5□□□□□ -0.09
SPTBN1-201ENST00000333896 BCANQ96GW7 911 aa14.44□□□□□ -0.1
SPTBN1-201ENST00000333896 ZBTB47Q9UFB7 747 aaPredicted RBP14.44□□□□□ -0.1
SPTBN1-201ENST00000333896 TRIM41Q8WV44 630 aa14.43□□□□□ -0.1
SPTBN1-201ENST00000333896 ANP32BQ92688 251 aaKnown RBP14.43□□□□□ -0.1
SPTBN1-201ENST00000333896 CHIC1Q5VXU3 224 aa14.42□□□□□ -0.1
SPTBN1-201ENST00000333896 BCL11AQ9H165 835 aa14.41□□□□□ -0.1
SPTBN1-201ENST00000333896 ITGAEP38570 1179 aa14.38□□□□□ -0.11
SPTBN1-201ENST00000333896 TNNT2P45379 298 aaPredicted RBP14.35□□□□□ -0.11
SPTBN1-201ENST00000333896 ANP32EQ9BTT0 268 aa14.32□□□□□ -0.12
SPTBN1-201ENST00000333896 SLC24A1O60721 1099 aa14.28□□□□□ -0.12
SPTBN1-201ENST00000333896 NCLP19338 710 aaKnown RBP14.28□□□□□ -0.12
SPTBN1-201ENST00000333896 NPM2Q86SE8 214 aaKnown RBP14.24□□□□□ -0.13
SPTBN1-201ENST00000333896 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
SPTBN1-201ENST00000333896 CANXP27824 592 aaKnown RBP14.22□□□□□ -0.13
SPTBN1-201ENST00000333896 HSP90AA1P07900 732 aaKnown RBP14.19□□□□□ -0.14
SPTBN1-201ENST00000333896 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
SPTBN1-201ENST00000333896 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.17□□□□□ -0.14
SPTBN1-201ENST00000333896 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
SPTBN1-201ENST00000333896 TRIM44Q96DX7 344 aaPredicted RBP14.17□□□□□ -0.14
SPTBN1-201ENST00000333896 ARXQ96QS3 562 aa14.15□□□□□ -0.14
SPTBN1-201ENST00000333896 DCAF1Q9Y4B6 1507 aa14.15□□□□□ -0.15
SPTBN1-201ENST00000333896 ERICH6BQ5W0A0 696 aa14.13□□□□□ -0.15
SPTBN1-201ENST00000333896 ANP32CO43423 234 aa14.12□□□□□ -0.15
SPTBN1-201ENST00000333896 NBR1Q14596 966 aa14.11□□□□□ -0.15
SPTBN1-201ENST00000333896 CDK11BP21127 795 aaKnown RBP14.05□□□□□ -0.16
SPTBN1-201ENST00000333896 UPF2Q9HAU5 1272 aaKnown RBP13.99□□□□□ -0.17
SPTBN1-201ENST00000333896 DDRGK1Q96HY6 314 aa13.95□□□□□ -0.18
SPTBN1-201ENST00000333896 NEUROD1Q13562 356 aa13.95□□□□□ -0.18
SPTBN1-201ENST00000333896 AMER1Q5JTC6 1135 aaPredicted RBP13.94□□□□□ -0.18
SPTBN1-201ENST00000333896 NEFMP07197 916 aa13.93□□□□□ -0.18
SPTBN1-201ENST00000333896 FKBP8Q14318 412 aa13.9□□□□□ -0.18
SPTBN1-201ENST00000333896 ZNF326Q5BKZ1 582 aaKnown RBP13.87□□□□□ -0.19
SPTBN1-201ENST00000333896 PPM1GO15355 546 aaPredicted RBP13.85□□□□□ -0.19
SPTBN1-201ENST00000333896 TRIM52Q96A61 297 aa13.85□□□□□ -0.19
SPTBN1-201ENST00000333896 FAM50AQ14320 339 aaKnown RBP13.83□□□□□ -0.2
SPTBN1-201ENST00000333896 BECN1Q14457 450 aa13.8□□□□□ -0.2
SPTBN1-201ENST00000333896 DNTTIP2Q5QJE6 756 aaKnown RBP13.8□□□□□ -0.2
SPTBN1-201ENST00000333896 NAP1L5Q96NT1 182 aaPredicted RBP13.79□□□□□ -0.2
SPTBN1-201ENST00000333896 LOC105371045A0A1W2PR82 267 aa13.75□□□□□ -0.21
SPTBN1-201ENST00000333896 PTMSP20962 102 aa13.74□□□□□ -0.21
SPTBN1-201ENST00000333896 RSPH6AQ9H0K4 717 aa13.73□□□□□ -0.21
SPTBN1-201ENST00000333896 NOP58Q9Y2X3 529 aaKnown RBP13.73□□□□□ -0.21
SPTBN1-201ENST00000333896 CCDC136Q96JN2 1154 aa13.72□□□□□ -0.21
SPTBN1-201ENST00000333896 PTMAP06454 111 aaKnown RBP13.71□□□□□ -0.21
SPTBN1-201ENST00000333896 DEKP35659 375 aaKnown RBP13.71□□□□□ -0.22
SPTBN1-201ENST00000333896 L1TD1Q5T7N2 865 aaKnown RBP13.7□□□□□ -0.22
SPTBN1-201ENST00000333896 RTN4Q9NQC3 1192 aaKnown RBP13.7□□□□□ -0.22
SPTBN1-201ENST00000333896 GOLGA6L22H0YM25 854 aa13.7□□□□□ -0.22
SPTBN1-201ENST00000333896 TULP1O00294 542 aaPredicted RBP13.67□□□□□ -0.22
SPTBN1-201ENST00000333896 ARID4BQ4LE39 1312 aaPredicted RBP13.66□□□□□ -0.22
SPTBN1-201ENST00000333896 CALRP27797 417 aaKnown RBP13.65□□□□□ -0.22
SPTBN1-201ENST00000333896 ZRSR1Q15695 479 aaKnown RBP13.62□□□□□ -0.23
SPTBN1-201ENST00000333896 CHAF1AQ13111 956 aaPredicted RBP13.62□□□□□ -0.23
SPTBN1-201ENST00000333896 TPRNQ4KMQ1 711 aa13.61□□□□□ -0.23
SPTBN1-201ENST00000333896 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.61□□□□□ -0.23
SPTBN1-201ENST00000333896 HNRNPUQ00839 825 aaKnown RBP eCLIP13.57□□□□□ -0.24
SPTBN1-201ENST00000333896 SALL2Q9Y467 1007 aaPredicted RBP13.56□□□□□ -0.24
SPTBN1-201ENST00000333896 HSP90AA2PQ14568 343 aaPredicted RBP13.56□□□□□ -0.24
SPTBN1-201ENST00000333896 MSNP26038 577 aaKnown RBP13.54□□□□□ -0.24
SPTBN1-201ENST00000333896 USP35Q9P2H5 1018 aa13.54□□□□□ -0.24
SPTBN1-201ENST00000333896 NCBP3Q53F19 620 aaKnown RBP13.54□□□□□ -0.24
SPTBN1-201ENST00000333896 MYH16Q9H6N6 1097 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms