Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 EMBP1-201ENST00000458200 901 ntBASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.46■■□□□ 1.35
SMC1BQ8NDV3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
SMC1BQ8NDV3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC23.45■■□□□ 1.35
SMC1BQ8NDV3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.45■■□□□ 1.35
SMC1BQ8NDV3 FAM99A-202ENST00000538190 1989 ntBASIC23.45■■□□□ 1.35
SMC1BQ8NDV3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 PTPA-216ENST00000432651 857 ntTSL 2 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
SMC1BQ8NDV3 STK25-204ENST00000405585 1643 ntTSL 2 BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 NUS1P1-201ENST00000446295 882 ntBASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
SMC1BQ8NDV3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 TUBB8P6-201ENST00000436895 1288 ntBASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 YBX1P10-201ENST00000444752 975 ntBASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.43■■□□□ 1.34
SMC1BQ8NDV3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 AC079776.4-201ENST00000511039 504 ntBASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 KRT8P20-201ENST00000423953 1409 ntBASIC23.42■■□□□ 1.34
SMC1BQ8NDV3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 TSSC2-201ENST00000450217 709 ntBASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 AL671883.3-201ENST00000603274 991 ntBASIC23.41■■□□□ 1.34
SMC1BQ8NDV3 FGF14-AS2-201ENST00000606448 1074 ntBASIC23.41■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms