Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SKA3Q8IX90 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 STK25-204ENST00000405585 1643 ntTSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SKA3Q8IX90 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.42■□□□□ 0.38
SKA3Q8IX90 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC17.41■□□□□ 0.38
SKA3Q8IX90 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.41■□□□□ 0.38
SKA3Q8IX90 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SKA3Q8IX90 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 UNC93B4-201ENST00000505679 747 ntBASIC17.4■□□□□ 0.38
SKA3Q8IX90 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.4■□□□□ 0.38
SKA3Q8IX90 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SKA3Q8IX90 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SKA3Q8IX90 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.39■□□□□ 0.37
SKA3Q8IX90 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SKA3Q8IX90 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.39■□□□□ 0.37
SKA3Q8IX90 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SKA3Q8IX90 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SKA3Q8IX90 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.39■□□□□ 0.37
SKA3Q8IX90 RPS2P52-201ENST00000469610 820 ntBASIC17.39■□□□□ 0.37
SKA3Q8IX90 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.39■□□□□ 0.37
SKA3Q8IX90 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms