Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL7A1Q02388 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 AC004951.3-201ENST00000418645 1148 ntBASIC14.19□□□□□ -0.14
COL7A1Q02388 SPDYE13P-201ENST00000445314 798 ntBASIC14.19□□□□□ -0.14
COL7A1Q02388 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.19□□□□□ -0.14
COL7A1Q02388 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.19□□□□□ -0.14
COL7A1Q02388 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
COL7A1Q02388 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC14.19□□□□□ -0.14
COL7A1Q02388 AC008040.2-201ENST00000461049 708 ntBASIC14.19□□□□□ -0.14
COL7A1Q02388 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.19□□□□□ -0.14
COL7A1Q02388 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.19□□□□□ -0.14
COL7A1Q02388 AP000692.2-201ENST00000608391 879 ntBASIC14.19□□□□□ -0.14
COL7A1Q02388 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC14.19□□□□□ -0.14
COL7A1Q02388 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC14.19□□□□□ -0.14
COL7A1Q02388 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL7A1Q02388 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
COL7A1Q02388 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 KRT18P38-201ENST00000449496 1282 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 AC111152.3-201ENST00000569699 673 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
COL7A1Q02388 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC14.18□□□□□ -0.14
COL7A1Q02388 AC139530.3-201ENST00000620344 690 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 AP006587.1-201ENST00000534129 1502 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC14.18□□□□□ -0.14
COL7A1Q02388 UNC93B7-201ENST00000509439 705 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC14.18□□□□□ -0.14
COL7A1Q02388 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 GOLGA6L3-201ENST00000507199 1679 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC14.18□□□□□ -0.14
COL7A1Q02388 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL7A1Q02388 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 AC116562.4-202ENST00000641738 218 ntBASIC14.18□□□□□ -0.14
COL7A1Q02388 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL7A1Q02388 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 PRSS44-201ENST00000515154 1146 ntBASIC14.17□□□□□ -0.14
COL7A1Q02388 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC14.17□□□□□ -0.14
COL7A1Q02388 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.17□□□□□ -0.14
COL7A1Q02388 AC092119.3-201ENST00000612618 583 ntBASIC14.17□□□□□ -0.14
COL7A1Q02388 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC14.17□□□□□ -0.14
COL7A1Q02388 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 GALC-202ENST00000393568 2054 ntTSL 2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 Z85996.1-201ENST00000494644 937 ntBASIC14.17□□□□□ -0.14
COL7A1Q02388 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC14.17□□□□□ -0.14
COL7A1Q02388 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
COL7A1Q02388 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC14.17□□□□□ -0.14
COL7A1Q02388 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
COL7A1Q02388 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.16□□□□□ -0.14
COL7A1Q02388 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.16□□□□□ -0.14
COL7A1Q02388 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
COL7A1Q02388 MIR2861-201ENST00000636310 90 ntBASIC14.16□□□□□ -0.14
COL7A1Q02388 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC14.16□□□□□ -0.14
COL7A1Q02388 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
COL7A1Q02388 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
COL7A1Q02388 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms