Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
RNF4P78317 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RNF4P78317 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.27■□□□□ 0.52
RNF4P78317 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF4P78317 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.27■□□□□ 0.52
RNF4P78317 DET1-205ENST00000558413 583 ntTSL 4 BASIC18.27■□□□□ 0.52
RNF4P78317 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.27■□□□□ 0.52
RNF4P78317 AC004264.1-201ENST00000608354 794 ntBASIC18.27■□□□□ 0.52
RNF4P78317 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
RNF4P78317 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RNF4P78317 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.27■□□□□ 0.51
RNF4P78317 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
RNF4P78317 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC18.26■□□□□ 0.51
RNF4P78317 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.26■□□□□ 0.51
RNF4P78317 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC18.26■□□□□ 0.51
RNF4P78317 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.26■□□□□ 0.51
RNF4P78317 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RNF4P78317 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
RNF4P78317 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
RNF4P78317 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.25■□□□□ 0.51
RNF4P78317 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
RNF4P78317 KRT16P5-201ENST00000455284 522 ntBASIC18.25■□□□□ 0.51
RNF4P78317 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.25■□□□□ 0.51
RNF4P78317 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.25■□□□□ 0.51
RNF4P78317 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
RNF4P78317 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
RNF4P78317 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
RNF4P78317 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
RNF4P78317 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
RNF4P78317 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
RNF4P78317 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 TCF3P1-201ENST00000423021 1937 ntBASIC18.24■□□□□ 0.51
RNF4P78317 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.24■□□□□ 0.51
RNF4P78317 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
RNF4P78317 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.24■□□□□ 0.51
RNF4P78317 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.24■□□□□ 0.51
RNF4P78317 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.24■□□□□ 0.51
RNF4P78317 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
RNF4P78317 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
RNF4P78317 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
RNF4P78317 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.23■□□□□ 0.51
RNF4P78317 AC112907.3-201ENST00000577781 2400 ntBASIC18.23■□□□□ 0.51
RNF4P78317 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.23■□□□□ 0.51
RNF4P78317 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms